dbacp00420
General Description
Peptide name : [D-P L-P]cGm
Source/Organism : Synthetic construct
Linear/Cyclic : Cyclic
Chirality : L
Sequence Information
Sequence : GCRRLCYKQRCVTYCRGpPR
Peptide length: 20
C-terminal modification: Cyclic
N-terminal modification : Amidation
Non-natural peptide information: None
Activity Information
Assay type : Cell viability assay
Assay time : 24h
Activity : CC50 : 51.5 ± 3.9 μM
Cell line : HeLa
Cancer type : Gastric cancer
Other activity : Anti-bacterial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2415.8888 Dalton
Aliphatic index : 0.34
Instability index : 43.56
Hydrophobicity (GRAVY) : -0.96
Isoelectric point : 9.931
Charge (pH 7) : 5.7175
Aromaticity : 0.1
Molar extinction coefficient (cysteine, cystine): (2980, 3230)
Hydrophobic/hydrophilic ratio : 0.9
hydrophobic moment : 0.3983
Missing amino acid : W,H,M,I,E,F,S,D,N,A
Most occurring amino acid : R
Most occurring amino acid frequency : 5
Least occurring amino acid : L
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.1, 0.2, 0.2)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)CN)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCC(=O)N1CCC[C@H]1C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | TTEHHTTTTTTEEETTCCCC |
| Chou-Fasman (CF) | CCCEEECCEEEEEECCCCCC |
| Neural Network (NN) | CCCCHCCCCCCEECCCCCCC |
| Joint/Consensus | CCCCCCCCCCCEEECCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Troeira Henriques S, et al. Redesigned Spider Peptide with Improved Antimicrobial and Anticancer Properties. ACS Chem Biol. 2017; 12:2324-2334. doi: 10.1021/acschembio.7b00459
Literature
Paper title : Redesigned Spider Peptide with Improved Antimicrobial and Anticancer Properties.
Doi : https://doi.org/10.1021/acschembio.7b00459
Abstract : Gomesin, a disulfide-rich antimicrobial peptide produced by the Brazilian spider Acanthoscurria gomesiana, has been shown to be potent against Gram-negative bacteria and to possess selective anticancer properties against melanoma cells. In a recent study, a backbone cyclized analogue of gomesin was shown to be as active but more stable than its native form. In the current study, we were interested in improving the antimicrobial properties of the cyclic gomesin, understanding its selectivity toward melanoma cells and elucidating its antimicrobial and anticancer mode of action. Rationally designed analogues of cyclic gomesin were examined for their antimicrobial potency, selectivity toward cancer cells, membrane-binding affinity, and ability to disrupt cell and model membranes. We improved the activity of cyclic gomesin by ∼10-fold against tested Gram-negative and Gram-positive bacteria without increasing toxicity to human red blood cells. In addition, we showed that gomesin and its analogues are more toxic toward melanoma and leukemia cells than toward red blood cells and act by selectively targeting and disrupting cancer cell membranes. Preference toward some cancer types is likely dependent on their different cell membrane properties. Our findings highlight the potential of peptides as antimicrobial and anticancer leads and the importance of selectively targeting cancer cell membranes for drug development.