dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp00562

General Description

Peptide name : [L5W]cGm

Source/Organism : Synthetic construct

Linear/Cyclic : Cyclic

Chirality : L

Sequence Information

Sequence : GCRRWCYKQRCVTYCRGR

Peptide length: 18

C-terminal modification: Cyclic

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : Cell viability assay

Assay time : 24h

Activity : CC50 : 17.1 ± 0.7 μM

Cell line : HeLa

Cancer type : Gastric cancer

Other activity : Anti-bacterial activity

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2294.7107 Dalton

Aliphatic index : 0.161

Instability index : 72.6

Hydrophobicity (GRAVY) : -1.15

Isoelectric point : 9.931

Charge (pH 7) : 5.7175

Aromaticity : 0.166

Molar extinction coefficient (cysteine, cystine): (8480, 8730)

Hydrophobic/hydrophilic ratio : 0.8

hydrophobic moment : 0.3315

Missing amino acid : H,P,M,I,E,F,S,D,L,N,A

Most occurring amino acid : R

Most occurring amino acid frequency : 5

Least occurring amino acid : W

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.0, 0.1, 0.2)

SMILES Notation: CC(C)[C@H](NC(=O)[C@H](CS)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CS)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)CN)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCC(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR TTEHHTTTTTTEEEETTT
Chou-Fasman (CF) CEEEEECCEEEEEECCCC
Neural Network (NN) CCCCCCCCCCEEEECCCC
Joint/Consensus CCCCCCCCCCEEEECCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 28741926

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Troeira Henriques S, et al. Redesigned Spider Peptide with Improved Antimicrobial and Anticancer Properties. ACS Chem Biol. 2017; 12:2324-2334. doi: 10.1021/acschembio.7b00459

Literature

Paper title : Redesigned Spider Peptide with Improved Antimicrobial and Anticancer Properties.

Doi : https://doi.org/10.1021/acschembio.7b00459

Abstract : Gomesin, a disulfide-rich antimicrobial peptide produced by the Brazilian spider Acanthoscurria gomesiana, has been shown to be potent against Gram-negative bacteria and to possess selective anticancer properties against melanoma cells. In a recent study, a backbone cyclized analogue of gomesin was shown to be as active but more stable than its native form. In the current study, we were interested in improving the antimicrobial properties of the cyclic gomesin, understanding its selectivity toward melanoma cells and elucidating its antimicrobial and anticancer mode of action. Rationally designed analogues of cyclic gomesin were examined for their antimicrobial potency, selectivity toward cancer cells, membrane-binding affinity, and ability to disrupt cell and model membranes. We improved the activity of cyclic gomesin by ∼10-fold against tested Gram-negative and Gram-positive bacteria without increasing toxicity to human red blood cells. In addition, we showed that gomesin and its analogues are more toxic toward melanoma and leukemia cells than toward red blood cells and act by selectively targeting and disrupting cancer cell membranes. Preference toward some cancer types is likely dependent on their different cell membrane properties. Our findings highlight the potential of peptides as antimicrobial and anticancer leads and the importance of selectively targeting cancer cell membranes for drug development.