dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp01301

General Description

Peptide name : Aurein-2.1

Source/Organism : Green; also golden bell frog; also southern bell frog

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : GLLDIVKKVVGAFGSL

Peptide length: 16

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : Not found

Cell line : Not found

Cancer type : Not found

Other activity : Anti-microbial activity; Anti-fungal activity

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 1615.9536 Dalton

Aliphatic index : 1.581

Instability index : -13.65

Hydrophobicity (GRAVY) : 1.2375

Isoelectric point : 8.5909

Charge (pH 7) : 0.7592

Aromaticity : 0.062

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 3

hydrophobic moment : -0.595

Missing amino acid : C,R,W,H,Q,T,P,M,E,Y,N

Most occurring amino acid : G

Most occurring amino acid frequency : 3

Least occurring amino acid : D

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.3, 0.3, 0.5)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)CN)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)O)C(C)C)C(C)C)C(C)C

Secondary Structure :

Method Prediction
GOR THHHHHEEEEEEEEEE
Chou-Fasman (CF) CCEEEEEEEECCCCCC
Neural Network (NN) CCCHHHHHHHCCCCCC
Joint/Consensus CCCCCCEEEECCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 15203252

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Apponyi MA, et al. Host-defence peptides of Australian anurans: structure, mechanism of action and evolutionary significance. Peptides. 2004; 25:1035-54. doi: 10.1016/j.peptides.2004.03.006

Literature

Paper title : Host-defence peptides of Australian anurans: structure, mechanism of action and evolutionary significance.

Doi : https://doi.org/10.1016/j.peptides.2004.03.006

Abstract : Host-defence peptides secreted from the skin glands of Australian frogs and toads, are, with a few notable exceptions, different from those produced by anurans elsewhere. This review summarizes the current knowledge of the following classes of peptide isolated and characterized from Australian anurans: neuropeptides (including smooth muscle active peptides, and peptides that inhibit the production of nitric oxide from neuronal nitric oxide synthase), antimicrobial and anticancer active peptides, antifungal peptides and antimalarial peptides. Other topics covered include sex pheromones of anurans, and the application of peptide profiling to (i). recognize particular populations of anurans of the same species and to differentiate between species, and (ii). investigate evolutionary aspects of peptide formation.