dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp01850

General Description

Peptide name : BmKn2

Source/Organism : Venom, Chinese scorpion

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : FIGAIARLLSKIF

Peptide length: 13

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : Not found

Cell line : Not found

Cancer type : Not found

Other activity : Anti-microbial activity

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 1448.7933 Dalton

Aliphatic index : 1.653

Instability index : -3.8308

Hydrophobicity (GRAVY) : 1.5923

Isoelectric point : 11.000

Charge (pH 7) : 1.7591

Aromaticity : 0.153

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 3.33333333

hydrophobic moment : 1.1381

Missing amino acid : C,W,H,Q,T,P,M,E,D,Y,N,V

Most occurring amino acid : I

Most occurring amino acid frequency : 3

Least occurring amino acid : G

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.3, 0.1, 0.5)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)CNC(=O)[C@@H](NC(=O)[C@@H](N)Cc1ccccc1)[C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)O)[C@@H](C)CC

Secondary Structure :

Method Prediction
GOR EHHHHHHHHHHHE
Chou-Fasman (CF) EEHHHHHHEECCC
Neural Network (NN) HHHHHHHHHHHHC
Joint/Consensus CHHHHHHHHHHHC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 15062994

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Click Here

CancerPPD2 ID : Not available

Reference

1 : Zeng XC, et al. Identification and functional characterization of novel scorpion venom peptides with no disulfide bridge from Buthus martensii Karsch. Peptides. 2004; 25:143-50. doi: 10.1016/j.peptides.2003.12.003

Literature

Paper title : Identification and functional characterization of novel scorpion venom peptides with no disulfide bridge from Buthus martensii Karsch.

Doi : https://doi.org/10.1016/j.peptides.2003.12.003

Abstract : The scorpion venom peptides with no disulfide bridge are rarely identified and poorly characterized so far. Here, we report the identification and characterization of four novel disulfide-bridge-free venom peptides (BmKa1, BmKa2, BmKb1 and BmKn2) from Buthus martensii Kasch. BmKa1 and BmKa2 are very acidic and hydrophilic, showing no any similarity to other proteins, whereas BmKb1 and BmKn2 both are basic, alpha-helical peptide with an amidated C-terminus, showing a little homology with other peptides. Functional tests with synthetic peptide showed that BmKn2 has strong antimicrobial activity against both Gram-positive and Gram-negative bacteria, whereas BmKb1 has weak activity in inhibiting the growth of these bacteria.