dbacp02307
General Description
Peptide name : Caspase 3 inhibitor
Source/Organism : Caspase 3 inhibitor
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : DEVD
Peptide length: 4
C-terminal modification: Linear
N-terminal modification : Fluoromethyl ketone(fmk)
Non-natural peptide information: None
Activity Information
Assay type : MTT/MTS assay
Assay time : 1h
Activity : 65% cytotoxicity at 30 µM
Cell line : Bcap-37
Cancer type : Breast cancer
Other activity : Anti-microbial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 476.4351 Dalton
Aliphatic index : 0.725
Instability index : -30.075
Hydrophobicity (GRAVY) : -1.575
Isoelectric point : 4.05
Charge (pH 7) : -3.2317
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 0.33333333
hydrophobic moment : -2.147
Missing amino acid : W,T,P,I,M,K,F,N,G,C,R,H,Q,S,Y,L,A
Most occurring amino acid : D
Most occurring amino acid frequency : 2
Least occurring amino acid : E
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.5, 0.2)
SMILES Notation: CC(C)[C@H](NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H](N)CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CHHH |
| Chou-Fasman (CF) | CCCC |
| Neural Network (NN) | CCCC |
| Joint/Consensus | CCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Wang C, et al. Anticancer mechanisms of temporin-1CEa, an amphipathic α-helical antimicrobial peptide, in Bcap-37 human breast cancer cells. Life Sci. 2013; 92:1004-14. doi: 10.1016/j.lfs.2013.03.016
Literature
Paper title : Anticancer mechanisms of temporin-1CEa, an amphipathic α-helical antimicrobial peptide, in Bcap-37 human breast cancer cells.
Doi : https://doi.org/10.1016/j.lfs.2013.03.016
Abstract : AIMS: Temporin-1CEa, a 17-residue antimicrobial peptide, is known to exert broad-spectrum anticancer activity that acts preferentially on cancer cells instead of normal cells. However, the mechanism of cancer cell death induced by temporin-1CEa is weakly understood. MAIN METHODS: Here, we investigated the cytotoxic and membrane-disrupting effects of temporin-1CEa on human breast cancer cell line Bcap-37, using MTT assay, electronic microscope observation, fluorescence imaging and flow cytometry analysis. KEY FINDINGS: The MTT assay indicated that one-hour temporin-1CEa treatment led to rapid cell death in either caspase-dependent or -independent manner. The electronic microscope observation suggested that temporin-1CEa exposure resulted in profound morphological changes in Bcap-37 cells. The fluorescence imaging and flow cytometry analysis demonstrated that temporin-1CEa exhibited membrane-disrupting property characterized by induction of cell-surface phosphatidylserine exposure, elevation of plasma membrane permeability, and rapid transmembrane potential depolarization. Moreover, temporin-1CEa might also induce rapid cell death through mitochondria-involved mechanisms, including rapid intracellular Ca(2+) leakage, collapse of mitochondrial membrane potential (Δφm) and over-generation of reactive oxygen species (ROS). SIGNIFICANCE: In summary, the present study indicates that temporin-1CEa triggers a rapid cytotoxicity in Bcap-37 cells through membrane-destruction and intracellular mechanisms involving mitochondria. These intracellular mechanisms and direct membrane-destruction effect were evaluated helping to understand the detail action of antimicrobial peptides in mammalian cancer cells.