dbacp02583
General Description
Peptide name : CSP-KQ
Source/Organism : Not found
Linear/Cyclic : Cyclic
Chirality : Not found
Sequence Information
Sequence : KQNLAEG
Peptide length: 7
C-terminal modification: Cyclic
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Not specified
Assay time : Not found
Activity : Not found
Cell line : C-33A
Cancer type : Human Cervical cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 758.8202 Dalton
Aliphatic index : 0.7
Instability index : 42.3429
Hydrophobicity (GRAVY) : -1.314
Isoelectric point : 6.0014
Charge (pH 7) : -0.2381
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 0.75
hydrophobic moment : 0.8795
Missing amino acid : C,R,W,H,T,P,M,I,F,S,D,Y,V
Most occurring amino acid : K
Most occurring amino acid frequency : 1
Least occurring amino acid : K
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.5, 0.2, 0.1)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHTHHTT |
| Chou-Fasman (CF) | HHHHCCC |
| Neural Network (NN) | CCCCCCC |
| Joint/Consensus | CCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Liu X, et al. Selection and identification of novel peptides specifically targeting human cervical cancer. Amino Acids. 2018; 50:577-592. doi: 10.1007/s00726-018-2539-1
Literature
Paper title : Selection and identification of novel peptides specifically targeting human cervical cancer.
Doi : https://doi.org/10.1007/s00726-018-2539-1
Abstract : Cervical cancer is the second most commonly diagnosed cancer and the third leading cause of cancer deaths among females in underdeveloped countries. This study aimed to identify several novel cervical cancer-specific targeting peptides (CSPs) to provide new methods for the effective diagnosis and treatment of cervical cancer. Peptide library screening in vivo was performed on human cervical cancer xenografts with Ph.D.™-12 and C7C phage display peptide libraries. Two specific peptide sequences (GDALFSVPLEVY and KQNLAEG), which were enriched in tumors, were screened, and respectively, named CSP-GD and CSP-KQ through three rounds of biopanning. The in vivo tumor-targeting ability of these peptides was identified by injecting them into mice with cervical cancer xenograft. CSPs were compounded and labeled with fluorescein isothiocyanate (FITC). The specificity and affinity of FITC-CSPs were evaluated in human cervical cancer cell lines and tissue microarrays in vitro by immunofluorescent staining. Results showed that FITC-CSP-GD and FITC-CSP-KQ evidently and specifically bound to the cell membrane and cytoplasm of SiHa, ME-180, and C-33A cells in vitro. In human cervical cancer tissue, FITC-CSP-GD and FITC-CSP-KQ strongly targeted human cervical adenocarcinoma and cervical squamous cell carcinoma tissues, respectively. A bright FITC signal was located mainly on the cell membrane and cytoplasm of tumor cells. In conclusion, the novel 12-residue peptide CSP-GD and 7-residue peptide CSP-KQ could specifically target human cervical cancer and may have the potential to be used in the diagnosis and targeted therapy of cervical cancer.