dbacp02830
General Description
Peptide name : Elastin derived peptide
Source/Organism : Elastin derived
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : VGVAPG
Peptide length: 6
C-terminal modification: Not found
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : Cell viability assay
Assay time : 24h
Activity : Not found
Cell line : A549
Cancer type : Lung cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 498.573 Dalton
Aliphatic index : 1.133
Instability index : 26.2833
Hydrophobicity (GRAVY) : 1.3
Isoelectric point : 5.495
Charge (pH 7) : -0.266
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : infinite
hydrophobic moment : 0.0506
Missing amino acid : W,T,I,M,E,K,F,D,N,C,R,H,Q,S,Y,L
Most occurring amino acid : V
Most occurring amino acid frequency : 2
Least occurring amino acid : A
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.1, 0.5, 0.3)
SMILES Notation: CC(C)[C@H](N)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)NCC(=O)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EEECCT |
| Chou-Fasman (CF) | CCCCCC |
| Neural Network (NN) | CCCCCC |
| Joint/Consensus | CCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Szychowski KA, et al. Effect of the elastin-derived peptides (VGVAPG and VVGPGA) on breast (MCF-7) and lung (A549) cancer cell lines in vitro. Biomed Pharmacother. 2022; 151:113149. doi: 10.1016/j.biopha.2022.113149
Literature
Paper title : Effect of the elastin-derived peptides (VGVAPG and VVGPGA) on breast (MCF-7) and lung (A549) cancer cell lines in vitro.
Doi : https://doi.org/10.1016/j.biopha.2022.113149
Abstract : Tissues are subjected to dynamic communication between cells and the extracellular matrix (ECM), resulting in ECM remodeling. One of the ECM components is elastin, which releases elastin-derived peptides (EDPs) during the aging process. Therefore, the aim of the present study was to evaluate the impact of the VGVAPG hexapeptide and elastin-like peptide VVGPGA (control) on certain metabolism parameters in human breast adenocarcinoma (MCF-7) and human lung carcinoma (A549) cell lines. The results did not show a significant effect of the peptides on metabolic activity and caspase-3 activity. However, more specific analysis revealed that VGVAPG and VVGPGA were able to increase KI67 protein expression in both tested cell lines after 24-h treatment. Moreover, the same correlation was observed at the KI67 gene level. VGVAPG also increased the P53, ATM and SHH gene expression in the A549 cells up to 19.08%, 20.74%, and 28.77%, respectively. Interestingly, the VGVAPG peptide exerted an effect on the expression of antioxidant enzymes SOD2 and CAT in the A549 and MCF-7 cells, especially after the 24-h treatment. Lastly, both peptides influenced the CAV1 and CLTC1 expression. Our results show that the tested EDPs have an effect on both A549 and MCF-7 cells at the cellular level. This may be correlated with the multidrug-resistance (MDR) phenotype in these cancer cells, which is an emerging problem in the current anticancer treatment. However, more research is needed in this field.