dbacp03027
General Description
Peptide name : GA-W4
Source/Organism : Brevinin-1EMa
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : FLWWLFKWAWK
Peptide length: 11
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : MTT/MTS assay
Assay time : 72h
Activity : IC50 : 14.58 µM
Cell line : SK-OV-3
Cancer type : Ovarian cancer
Other activity : Anti-microbial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1610.9402 Dalton
Aliphatic index : 0.8
Instability index : 14.5091
Hydrophobicity (GRAVY) : 0.3273
Isoelectric point : 10.002
Charge (pH 7) : 1.7581
Aromaticity : 0.545
Molar extinction coefficient (cysteine, cystine): (22000, 22000)
Hydrophobic/hydrophilic ratio : 4.5
hydrophobic moment : 0.4492
Missing amino acid : C,R,H,Q,T,P,M,I,E,S,D,Y,N,V,G
Most occurring amino acid : W
Most occurring amino acid frequency : 4
Least occurring amino acid : A
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.4, 0, 0.7)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)Cc1ccccc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CCCCN)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHH |
| Chou-Fasman (CF) | EEEHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHC |
| Joint/Consensus | HHHHHHHHHHC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Kang SJ, et al. Anticancer activity of undecapeptide analogues derived from antimicrobial peptide, brevinin-1EMa. Arch Pharm Res. 2012; 35:791-9. doi: 10.1007/s12272-012-0505-0
Literature
Paper title : Anticancer activity of undecapeptide analogues derived from antimicrobial peptide, brevinin-1EMa.
Doi : https://doi.org/10.1007/s12272-012-0505-0
Abstract : In spite of great advances in cancer therapy, cancer remains the major cause of death throughout the world. The increasing resistance of cancer cells towards current anticancer drugs requires development of anticancer agents with a new mode of action. Some antimicrobial peptides have become therapeutic candidates as new anticancer agents. As part of an effort to develop new antimicrobial and/or anticancer agents from natural peptides with low molecular weights, we have investigated the shortest bioactive analogues, which were derived from a 24-residue antimicrobial peptide, Brevinin-1EMa. Recently, we found four bioactive undecapeptides derived from a cationic, amphipathic α-helical, 11-residue peptide (named herein GA-W2: FLGWLFKWASK-NH(2)) (Won et al., 2011). In order to identify the potential of these peptides as anticancer agents, we investigated the anticancer activity of four undecapeptides against seven tumor cell lines such as A498 (kidney), A549 (lung), HCT116 (colon), MKN45 (stomach), PC-3 (prostate), SK-MEL-2 (skin) and SK-OV-3 (ovary). GA-K4 (FLKWLFKWAKK-NH(2)), which had the most potent antimicrobial activity of the four undecapeptides, also exhibited the most potent anticancer activity and synergistic effect in combination with doxorubicin. Therefore, GA-K4 peptide may be a potentially useful candidate as an anticancer peptide agent.