dbacp03124
General Description
Peptide name : Gomesin
Source/Organism : Tarantula spider sp.
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : GCRRLCYKQRCVTYCRGR
Peptide length: 18
C-terminal modification: Not found
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Lactate dehydrogenase (LDH) assay
Assay time : 24h
Activity : MIC : 10 mM
Cell line : U-87 MG
Cancer type : Glioblastoma
Other activity : Anti-microbial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2221.6584 Dalton
Aliphatic index : 0.377
Instability index : 40.7778
Hydrophobicity (GRAVY) : -0.888
Isoelectric point : 9.931
Charge (pH 7) : 5.7175
Aromaticity : 0.111
Molar extinction coefficient (cysteine, cystine): (2980, 3230)
Hydrophobic/hydrophilic ratio : 0.8
hydrophobic moment : 0.5315
Missing amino acid : W,H,P,M,I,E,F,S,D,N,A
Most occurring amino acid : R
Most occurring amino acid frequency : 5
Least occurring amino acid : L
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.1, 0.1, 0.2)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)CN)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCC(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | TTEHHTTTTTTEEEETTT |
| Chou-Fasman (CF) | CCCEEECCEEEEEECCCC |
| Neural Network (NN) | CCCCHCCCCCCEEECCCC |
| Joint/Consensus | CCCCCCCCCCCEEECCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Barbosa FM, et al. Gomesin, a peptide produced by the spider Acanthoscurria gomesiana, is a potent anticryptococcal agent that acts in synergism with fluconazole. FEMS Microbiol Lett. 2007; 274:279-86. doi: 10.1111/j.1574-6968.2007.00850.x
Literature
Paper title : Gomesin, a peptide produced by the spider Acanthoscurria gomesiana, is a potent anticryptococcal agent that acts in synergism with fluconazole.
Doi : https://doi.org/10.1111/j.1574-6968.2007.00850.x
Abstract : Gomesin is an 18-residue cysteine-rich antimicrobial peptide produced by hemocytes of the spider Acanthoscurria gomesiana. In the present study, the antifungal properties of gomesin against Cryptococcus neoformans, the etiologic agent of cryptococcosis, were evaluated. Gomesin bound to the cell surface of cryptococci, which resulted in cell death associated with membrane permeabilization. Antifungal concentrations of gomesin were not toxic for human brain cells. Supplementation of cryptococcal cultures with the peptide (1 microM) caused a decrease in capsule expression and rendered fungal cells more susceptible to killing by human brain phagocytes. The possible use of gomesin in combination with fluconazole, a standard antifungal drug, was also evaluated. In association with fluconazole, gomesin concentrations with low antimicrobial activity (0.1-1 microM) inhibited fungal growth and enhanced the antimicrobial activity of brain phagocytes. These results reveal the potential of gomesin to promote inhibition of cryptococcal growth directly or by enhancing the effectiveness of host defenses.