dbacp03243
General Description
Peptide name : HAL-2/13
Source/Organism : Sweat bees and their analogs
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : GKWMTLLKHILK
Peptide length: 12
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information: None
Activity Information
Assay type : MTT/MTS assay
Assay time : 48h
Activity : IC50 : 13 ± 3 µM
Cell line : HeLa
Cancer type : Cervical cancer
Other activity : Anti-microbial activity; Anti-fungal activity; Hemolytic activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1467.863 Dalton
Aliphatic index : 1.3
Instability index : 57.9417
Hydrophobicity (GRAVY) : 0.075
Isoelectric point : 10.302
Charge (pH 7) : 2.8443
Aromaticity : 0.083
Molar extinction coefficient (cysteine, cystine): (5500, 5500)
Hydrophobic/hydrophilic ratio : 1.4
hydrophobic moment : -1.25
Missing amino acid : C,R,Q,P,E,F,S,D,Y,N,A,V
Most occurring amino acid : K
Most occurring amino acid frequency : 3
Least occurring amino acid : G
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.5, 0.0, 0.5)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CCSC)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CCCCN)NC(=O)CN)[C@@H](C)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | THHHHHHHHHHH |
| Chou-Fasman (CF) | CCCHHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHHC |
| Joint/Consensus | CHHHHHHHHHHC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Slaninová J, et al. Toxicity study of antimicrobial peptides from wild bee venom and their analogs toward mammalian normal and cancer cells. Peptides. 2012; 33:18-26. doi: 10.1016/j.peptides.2011.11.002
Literature
Paper title : Toxicity study of antimicrobial peptides from wild bee venom and their analogs toward mammalian normal and cancer cells.
Doi : https://doi.org/10.1016/j.peptides.2011.11.002
Abstract : Recently, we have isolated and characterized remarkable antimicrobial peptides (AMPs) from the venom reservoirs of wild bees. These peptides (melectin, lasioglossins, halictines and macropin) and their analogs display high antimicrobial activity against Gram-positive and -negative bacteria, antifungal activity and low or moderate hemolytic activity. Here we describe cytotoxicity of the above-mentioned AMPs and some of their analogs toward two normal cell lines (human umbilical vein endothelial cells, HUVEC, and rat intestinal epithelial cells, IEC) and three cancer cell lines (HeLa S3, CRC SW 480 and CCRF-CEM T). HeLa S3 cells were the most sensitive ones (concentration causing 50% cell death in the case of the most toxic analogs was 2.5-10 μM) followed by CEM cells. For the other cell lines to be killed, the concentrations had to be four to twenty times higher. These results bring promising outlooks of finding medically applicable drugs on the basis of AMPs. Experiments using fluorescently labeled lasioglossin III (Fl-VNWKKILGKIIKVVK-NH(2)) as a tracer confirmed that the peptides entered the mammalian cells in higher quantities only after they reached the toxic concentration. After entering the cells, their concentration was the highest in the vicinity of the nucleus, in the nucleolus and in granules which were situated at very similar places as mitochondria. Experiments performed using cells with tetramethylrhodamine labeled mitochondria showed that mitochondria were fragmented and lost their membrane potential in parallel with the entrance of the peptides into the cell and the disturbance of the cell membrane.