dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp03522

General Description

Peptide name : KillerFLIP

Source/Organism : Not found

Linear/Cyclic : linear

Chirality : L

Sequence Information

Sequence : YGRKKRRQRRRREADFFWSLCTADMS

Peptide length: 26

C-terminal modification: linear

N-terminal modification : Free

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : Not found

Cell line : Jurkat

Cancer type : Blood cancer

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 3320.7706 Dalton

Aliphatic index : 0.226

Instability index : 134.426

Hydrophobicity (GRAVY) : -1.569

Isoelectric point : 11.293

Charge (pH 7) : 5.7522

Aromaticity : 0.153

Molar extinction coefficient (cysteine, cystine): (6990, 6990)

Hydrophobic/hydrophilic ratio : 0.52941176

hydrophobic moment : -0.231

Missing amino acid : H,P,I,N,V

Most occurring amino acid : R

Most occurring amino acid frequency : 7

Least occurring amino acid : Y

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.1, 0.2)

SMILES Notation: CSCC[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CS)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CO)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)CNC(=O)[C@@H](N)Cc1ccc(O)cc1)[C@@H](C)O)C(=O)N[C@@H](CO)C(=O)O

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHHTHHHHHHHHHHHHH
Chou-Fasman (CF) CHHHHHHHHHHHHHEEEEEHHHHCCC
Neural Network (NN) CCCCCCCCCCCCCCCHHHHHCCCCCC
Joint/Consensus CHHHHHHHHHHHCCCHHHHHHHHCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 24176852

Uniprot : Not available

PDB : Not available

CancerPPD : Click here

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Pennarun B, et al. killerFLIP: a novel lytic peptide specifically inducing cancer cell death. Cell Death Dis. 2013; 4:e894. doi: 10.1038/cddis.2013.401

Literature

Paper title : killerFLIP: a novel lytic peptide specifically inducing cancer cell death.

Doi : https://doi.org/10.1038/cddis.2013.401

Abstract : One of the objectives in the development of effective cancer therapy is induction of tumor-selective cell death. Toward this end, we have identified a small peptide that, when introduced into cells via a TAT cell-delivery system, shows a remarkably potent cytoxicity in a variety of cancer cell lines and inhibits tumor growth in vivo, whereas sparing normal cells and tissues. This fusion peptide was named killerFLIP as its sequence was derived from the C-terminal domain of c-FLIP, an anti-apoptotic protein. Using structure activity analysis, we determined the minimal bioactive core of killerFLIP, namely killerFLIP-E. Structural analysis of cells using electron microscopy demonstrated that killerFLIP-E triggers cell death accompanied by rapid (within minutes) plasma membrane permeabilization. Studies of the structure of the active core of killerFLIP (-E) indicated that it possesses amphiphilic properties and self-assembles into micellar structures in aqueous solution. The biochemical properties of killerFLIP are comparable to those of cationic lytic peptides, which participate in defense against pathogens and have also demonstrated anticancer properties. We show that the pro-cell death effects of killerFLIP are independent of its sequence similarity with c-FLIPL as killerFLIP-induced cell death was largely apoptosis and necroptosis independent. A killerFLIP-E variant containing a scrambled c-FLIPL motif indeed induced similar cell death, suggesting the importance of the c-FLIPL residues but not of their sequence. Thus, we report the discovery of a promising synthetic peptide with novel anticancer activity in vitro and in vivo.