dbacp03603
General Description
Peptide name : l3,4,8,10K5L7
Source/Organism : Diastereomeric peptide
Linear/Cyclic : Linear
Chirality : Mix
Sequence Information
Sequence : KLllKLKlKlLK
Peptide length: 12
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : XTT assay
Assay time : 24h
Activity : LC50 : >50 µM
Cell line : D-122
Cancer type : Lung cancer
Other activity : Anti-microbial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1450.98 Dalton
Aliphatic index : 0.975
Instability index : -47.433
Hydrophobicity (GRAVY) : 0.5917
Isoelectric point : 10.602
Charge (pH 7) : 4.7551
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 0.6
hydrophobic moment : -1.015
Missing amino acid : W,T,P,I,M,E,F,D,N,G,C,R,H,Q,S,Y,A,V
Most occurring amino acid : K
Most occurring amino acid frequency : 5
Least occurring amino acid : L
Least occurring amino acid frequency : 3
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (1, 0, 0.5)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](CCCCN)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHH |
| Chou-Fasman (CF) | HHHHHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHHH |
| Joint/Consensus | HHHHHHHHHHHH |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Papo N, et al. A novel lytic peptide composed of DL-amino acids selectively kills cancer cells in culture and in mice. J Biol Chem. 2003; 278:21018-23. doi: 10.1074/jbc.M211204200
Literature
Paper title : A novel lytic peptide composed of DL-amino acids selectively kills cancer cells in culture and in mice.
Doi : https://doi.org/10.1074/jbc.M211204200
Abstract : The high toxicity of most chemotherapeutic drugs and their inactivation by multidrug resistance phenotypes motivated extensive search for drugs with new modes of action. We designed a short cationic diastereomeric peptide composed of d- and l-leucines, lysines, and arginines that has selective toxicity toward cancer cells and significantly inhibits lung metastasis formation in mice (86%) with no detectable side effects. Its ability to depolarize the transmembrane potential of cancer cells at the same rate (within minutes) and concentration (3 micro m), at which it shows biological activity, suggests a killing mechanism that involves plasma membrane perturbation. Confocal microscopy experiments verified that the cells died as a result of acute injury, swelling, and bursting, suggesting necrosis. Biosensor binding experiments and attenuated total reflectance-Fourier transform infrared spectroscopy using model membranes have substantiated its high selectivity toward cancer cells. Although this is an initial study that looked at tumor formation rather than the ability of the peptides to reduce established tumors, the simple sequence of the peptide, its high solubility, substantial resistance to degradation, and inactivation by serum components might make it a good candidate for future anticancer treatment.