dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp03643

General Description

Peptide name : Lactoferricin B

Source/Organism : Cattle

Linear/Cyclic : Not found

Chirality : Not found

Sequence Information

Sequence : FKCRRWQWRMKKLGAPSITCVRRAF

Peptide length: 25

C-terminal modification: Not found

N-terminal modification : Not found

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : MIC : 0.3 - 150 pg/ml

Cell line : Not found

Cancer type : Not found

Other activity : Anti-bacterial activity

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 3125.7888 Dalton

Aliphatic index : 0.508

Instability index : 77.924

Hydrophobicity (GRAVY) : -0.576

Isoelectric point : 11.840

Charge (pH 7) : 7.7373

Aromaticity : 0.16

Molar extinction coefficient (cysteine, cystine): (11000, 11125)

Hydrophobic/hydrophilic ratio : 1.27272727

hydrophobic moment : -0.984

Missing amino acid : H,E,D,Y,N

Most occurring amino acid : R

Most occurring amino acid frequency : 5

Least occurring amino acid : Q

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.1, 0.3)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@H](C)NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCSC)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](N)Cc1ccccc1)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)O)C(C)C)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHTTCCCCEEEEHHHH
Chou-Fasman (CF) CCCCEEHHHHHHCCCEEEEECCCCC
Neural Network (NN) HHHHHHHHHHHCCCCCCCEEEEECC
Joint/Consensus HHHHHHHHHHHCCCCCCEEEECCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 1490908

Uniprot : Not available

PDB : 1LFC

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Bellamy W, et al. Antibacterial spectrum of lactoferricin B, a potent bactericidal peptide derived from the N-terminal region of bovine lactoferrin. J Appl Bacteriol. 1992; 73:472-9. doi: 10.1111/j.1365-2672.1992.tb05007.x

Literature

Paper title : Antibacterial spectrum of lactoferricin B, a potent bactericidal peptide derived from the N-terminal region of bovine lactoferrin.

Doi : https://doi.org/10.1111/j.1365-2672.1992.tb05007.x

Abstract : A physiologically diverse range of Gram-positive and Gram-negative bacteria was found to be susceptible to inhibition and inactivation by lactoferricin B, a peptide produced by gastric pepsin digestion of bovine lactoferrin. The list of susceptible organisms includes Escherichia coli, Salmonella enteritidis, Klebsiella pneumoniae, Proteus vulgaris, Yersinia enterocolitica, Pseudomonas aeruginosa, Campylobacter jejuni, Staphylococcus aureus, Streptococcus mutans, Corynebacterium diphtheriae, Listeria monocytogenes and Clostridium perfringens. Concentrations of lactoferricin B required to cause complete inhibition of growth varied within the range of 0.3 to 150 micrograms/ml, depending on the strain and the culture medium used. The peptide showed activity against E. coli O111 over the range of pH 5.5 to 7.5 and was most effective under slightly alkaline conditions. Its antibacterial effectiveness was reduced in the presence of Na+, K+, Mg2+ or Ca2+ ions, or in the presence of various buffer salts. Lactoferricin B was lethal, causing a rapid loss of colony-forming capability in most of the species tested. Pseudomonas fluorescens, Enterococcus faecalis and Bifidobacterium bifidum strains were highly resistant to this peptide.