dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp04382

General Description

Peptide name : MAC1/10

Source/Organism : Wallabies and their analogs

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : GFKMALKLLKKVL

Peptide length: 13

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : MTT/MTS assay

Assay time : 48h

Activity : IC50 : 15 ± 6 µM

Cell line : HeLa

Cancer type : Cervical cancer

Other activity : Anti-microbial activity; Anti-fungal activity; Hemolytic activity

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 1488.9649 Dalton

Aliphatic index : 1.5

Instability index : 6.1154

Hydrophobicity (GRAVY) : 0.7615

Isoelectric point : 10.477

Charge (pH 7) : 3.7561

Aromaticity : 0.076

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 2.25

hydrophobic moment : 1.0497

Missing amino acid : C,R,W,H,Q,T,P,I,E,S,D,Y,N

Most occurring amino acid : K

Most occurring amino acid frequency : 4

Least occurring amino acid : G

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.7, 0.0, 0.4)

SMILES Notation: CSCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccccc1)NC(=O)CN)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)O)C(C)C

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHHE
Chou-Fasman (CF) HHHHHHHHHHCCC
Neural Network (NN) HHHHHHHHHHHHH
Joint/Consensus HHHHHHHHHHHHC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 22100226

Uniprot : Not available

PDB : Not available

CancerPPD : Click here

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Slaninová J, et al. Toxicity study of antimicrobial peptides from wild bee venom and their analogs toward mammalian normal and cancer cells. Peptides. 2012; 33:18-26. doi: 10.1016/j.peptides.2011.11.002

Literature

Paper title : Toxicity study of antimicrobial peptides from wild bee venom and their analogs toward mammalian normal and cancer cells.

Doi : https://doi.org/10.1016/j.peptides.2011.11.002

Abstract : Recently, we have isolated and characterized remarkable antimicrobial peptides (AMPs) from the venom reservoirs of wild bees. These peptides (melectin, lasioglossins, halictines and macropin) and their analogs display high antimicrobial activity against Gram-positive and -negative bacteria, antifungal activity and low or moderate hemolytic activity. Here we describe cytotoxicity of the above-mentioned AMPs and some of their analogs toward two normal cell lines (human umbilical vein endothelial cells, HUVEC, and rat intestinal epithelial cells, IEC) and three cancer cell lines (HeLa S3, CRC SW 480 and CCRF-CEM T). HeLa S3 cells were the most sensitive ones (concentration causing 50% cell death in the case of the most toxic analogs was 2.5-10 μM) followed by CEM cells. For the other cell lines to be killed, the concentrations had to be four to twenty times higher. These results bring promising outlooks of finding medically applicable drugs on the basis of AMPs. Experiments using fluorescently labeled lasioglossin III (Fl-VNWKKILGKIIKVVK-NH(2)) as a tracer confirmed that the peptides entered the mammalian cells in higher quantities only after they reached the toxic concentration. After entering the cells, their concentration was the highest in the vicinity of the nucleus, in the nucleolus and in granules which were situated at very similar places as mitochondria. Experiments performed using cells with tetramethylrhodamine labeled mitochondria showed that mitochondria were fragmented and lost their membrane potential in parallel with the entrance of the peptides into the cell and the disturbance of the cell membrane.