dbacp04542
General Description
Peptide name : Malanin chain A
Source/Organism : Plant sources
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : DYPKLTFTTS
Peptide length: 10
C-terminal modification: Linear
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : MTT assay
Assay time : Not found
Activity : IC50 : 7.71 ± 0.24 nM
Cell line : PC-12
Cancer type : Breast cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1172.2838 Dalton
Aliphatic index : 0.39
Instability index : 25.19
Hydrophobicity (GRAVY) : -0.66
Isoelectric point : 5.8349
Charge (pH 7) : -0.2408
Aromaticity : 0.2
Molar extinction coefficient (cysteine, cystine): (1490, 1490)
Hydrophobic/hydrophilic ratio : 0.42857142
hydrophobic moment : -0.165
Missing amino acid : C,R,W,H,Q,M,I,E,N,A,V,G
Most occurring amino acid : T
Most occurring amino acid frequency : 3
Least occurring amino acid : D
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.6)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@@H]1CCCN1C(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@@H](N)CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)O)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CCTTEEEEEE |
| Chou-Fasman (CF) | CCCEEEECCC |
| Neural Network (NN) | CCCCCCCCCC |
| Joint/Consensus | CCCCEEECCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Yuan Y, et al. Purification, characterization and cytotoxicity of malanin, a novel plant toxin from the seeds of Malania oleifera. Toxicon. 2009; 54:121-7. doi: 10.1016/j.toxicon.2009.03.024
Literature
Paper title : Purification, characterization and cytotoxicity of malanin, a novel plant toxin from the seeds of Malania oleifera.
Doi : https://doi.org/10.1016/j.toxicon.2009.03.024
Abstract : Malanin, a novel plant toxin with a molecular weight of 61,875 Da and an isoelectric point of 5.5, was isolated from Malania oleifera seeds by homogenization, ammonium sulfate precipitation and hydrophobic interaction chromatography (HIC). It is a glycoprotein with two chains, chain-A and chain-B, which are crosslinked by one or more disulfide bonds. The N-terminal amino-acid sequences of malanin are DETXTDEEFN (X was commonly C) in chain-B, and DYPKLTFTTS in chain-A. Malanin exhibited highly cytotoxic activities against cancer cell lines (HeLa, PC-12, MCF-7, K562) and non-cancer cell lines (Vero and MDCK), producing IC(50) values of 0.15+/-0.08, 7.71+/-0.24, 11.20+/-0.02, 15.80+/-0.09, 2.79+/-0.05 and 3.92+/-0.01 nM, respectively. It significantly inhibited the growth of HeLa cells through cell-cycle arrest at S phase and induced an apoptotic response. LD(50) values were determined in ICR mice, which were found to be 26.22 microg/kg and 43.11 mg/kg by i.p. and i.g. respectively. Thus, malanin is amongst the most potent toxin of plant origin.