dbacp04680
General Description
Peptide name : Microbial collagenase (EC 3.4.24.3)
Source/Organism : Soil-dwelling bacterium
Linear/Cyclic : Linear
Chirality : Not found
Sequence Information
Sequence : MGAVLPLALAGAMGVALLAQPAQAQPNSPSAAMASNASQPARTTASADPAPQAQQASAPDTGHRTEDRRPVSQLPPLSADKSALREAYGDHEAPLSAKAAACDPADFTGRTGAELVRQIKASTTDCVNTLFSLTGNNARLAFREAQMASVAYALRDNSAYYPGDGSTGTPQLVLYLRAGYYVQWYNPDVVGPYGSALRTAVRSGLDSFFASPRSRDVTDENGETLSEAVILIDSAQENARYLNVVKRMLADYDSSWNGLSRMLAAVNGVYTVTFRGHQVPEFVSAVEADPSLIDSLHRFAADHLSLLDGDHAYLTSNAGRELGRFLQYPSLRGKARPLATDLLGRTSITGPTAPLWVGIAEMADYYDRANCSAYGVCDLQERLRREVLPVRHTCSPGIRILAQQMTSAELSASCTSLIGQDAYFHRIAKDDGPVADDHNTSIEVIAYDSSADYQTYAGAMYGIDTNNGGMYLEGDPSVVGNQPRFIAYEAEWLRPDFHIWNLNHEYTHYLDGRFTMYGDFAAGMSTPTVWWVEGFAEYISYHYRGEPYTAAMTEAGKGTYALSTLFGTDYSHDTTRVYRWGYLAVRYMLEKHPADMDTVLGHYRTGQWAAARTHLVGTIGTRYDSDFRTWLAGCAAGDCGDGSTTPVAECTDPDPRVLGENCRRGDLSATTGNYAYHYLYIPAGTERLKITVSGGTGDADLYYSGTGWATTASHTSRDTGPGNTHTLTVTDPPAGANYISLHAASTFGGTTVTTAY
Peptide length: 756
C-terminal modification: Linear
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Not specified
Assay time : Not found
Activity : Not found
Cell line : Not found
Cancer type : Not found
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 81703.5546 Dalton
Aliphatic index : 0.707
Instability index : 34.7049
Hydrophobicity (GRAVY) : -0.320
Isoelectric point : 5.2413
Charge (pH 7) : -23.6825
Aromaticity : 0.099
Molar extinction coefficient (cysteine, cystine): (129040, 129665)
Hydrophobic/hydrophilic ratio : 1.02139037
hydrophobic moment : -0.004
Missing amino acid : None
Most occurring amino acid : A
Most occurring amino acid frequency : 99
Least occurring amino acid : K
Least occurring amino acid frequency : 9
Structural Information
3D structure : Not Available
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)
SMILES Notation: 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Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | ECCCCHHHHHHHHHHHHHHCHCCCCCCCCCHEEHHTTCCCCEEEEECCCCCHHHHTCCTTTTCCETTCCTTTCCCCCCHTTHHHHHHTTCHHCHHHHHHHHCCCTTCCCCCTHHHHHHHETCCETTEEEEEEETTCCHHHHHHHHHHHHHHHHETTTTTECCTCCCCCCCEEEEEEEEEEEEEECCTTEECCCCCEEEEEEETTCEEEECCTTTTTEETTTTCHHHHHEEEEHHHHHHHHHHHHHHEEEEECTTTTTTHHHEEHEETTCEEEEEETTCCCHEEEHHHTCTTHHHHHHHHHHHHHTEETTCCEEEETTTTCHTEEEECCTTCTTTCCTTEEEEEEEEEEECCCCCEEEEHHHHHHHTTTTTTTTTTCCHHHHHHHHTEEEEEETTCTCCEEEHHHHCCHHHHHTEEEETTCHHHHHHHTTTTCCEECTTTTEEEEEEECTTTTCEEETTEEEEECCCTTCEEETTCCCEETCCCEEHHHHHHHHHHHHHHHTTTTTHEEETTTTEEEECCHHTTCCCCCEEEHTTHHHHHEEETTTCCCHHHHHHTTTCCEEEEEEEEEETTTTCEEEEETTTHHHHHHHHTCCHHHHHEEEEEEETHHHHHHHEEEEEEEEEETTTCEEEETTTCTTCCCTTCCCCEEECCCCCCCETTTTHETTTTTEETTTCTEEEEECCTCCHHEEEEEETCCCCCEEEEETEEEEEEEEEEEEETCTTCCEEEEEECCCTTCEEEEEEEEEEETCEEEEEEE |
| Chou-Fasman (CF) | CCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHCCCCCCHHHHCEEEECCCCCHHHHHHHHHHCCHHHHCCHHHHHHCCCCCEEEECHHHHEEHHHHEEEEEEEEEEEEECCCHHHHHHHHHHHHEEHHHHCCCEEECCCCEEECEEEEEECCCEEEEEECCCEEEECCCHHHHEEEECCCCCCCCCCCCEEECCCCCHHHHHHEEEEHHHHHHCCEEEEEHHHHHHCCCCCCCCHHHHHHCEEEEEEEECCEECCCEEEHHHHCCEEEEHHHHHHHHHHHHHHCCCCEEECCCHHHHEECEECCCCHHHHHHHHHHHHEEEEEEECCCCEEEEHHHHHCCCCCCCCCCEEEEHHHHHHHHHHEEEEEECCEEEEHHHHHCHHHHHHCEEEEEEEHHHHEEHHHHCCCCCCCCCCEEEECEECCCCCCEEEEHHHHEEEECCCCEECCCCCCEEEECCCEEEHHHHHHCCCCCEEECCHHHHEECCCCEEEECCHHHHHCCEEEEEEEEHHHHEEEEECCCCCCHHHHHHHCCEEEEEEEEEEEECCCEEEEEEEEEEECEEEHHHHHHHHHEEEEECEEEEHHHHHHEEEEEEEEEECCCCEEEEHHHHHHHCCCCCEEEEHHHHCCCCCEECCCCCCCCCCEEEEECEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCEEEEHHHHEEEEEEEEEECCC |
| Neural Network (NN) | CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHCCCCCCCHHCHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCEEECCCCCCCEEECCCCCCCCCCCCCEEHHHHCCCCCCHHHHHCCCCCEECCCCCEECCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEEEE |
| Joint/Consensus | CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCEEEHHHHHHHHHHHCEEEECCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCEEEECCCCCCEEECCCCCEECCCCEEHHHHHHCCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEECHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEECCEEEEEEE |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Not available.
ADMET Properties: Not available.
Cross Referencing databases
Reference
1 : Wang L, et al. Draft genome sequence of Streptomyces globisporus C-1027, which produces an antitumor antibiotic consisting of a nine-membered enediyne with a chromoprotein. J Bacteriol. 2012; 194:4144. doi: 10.1128/JB.00797-12
Literature
Paper title : Draft genome sequence of Streptomyces globisporus C-1027, which produces an antitumor antibiotic consisting of a nine-membered enediyne with a chromoprotein.
Doi : https://doi.org/10.1128/JB.00797-12
Abstract : Streptomyces globisporus C-1027 is the producer of antitumor antibiotic C-1027, a nine-membered enediyne-containing compound. Here we present a draft genome sequence of S. globisporus C-1027 containing the intact biosynthetic gene cluster for this antibiotic. The genome also carries numerous sets of genes for the biosynthesis of diverse secondary metabolites.