dbacp04700
General Description
Peptide name : MPC-A5K,A8K
Source/Organism : Amino acid substitution
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : LNLKKLLKVAKKIL
Peptide length: 14
C-terminal modification: Not found
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Not specified
Assay time : Not found
Activity : Not found
Cell line : Not found
Cancer type : Not found
Other activity : Anti-microbial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1622.1339 Dalton
Aliphatic index : 1.95
Instability index : -7.2786
Hydrophobicity (GRAVY) : 0.4643
Isoelectric point : 10.602
Charge (pH 7) : 4.7551
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 1.33333333
hydrophobic moment : -1.653
Missing amino acid : C,R,W,H,Q,T,P,M,E,F,S,D,Y,G
Most occurring amino acid : L
Most occurring amino acid frequency : 5
Least occurring amino acid : N
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.7, 0.0, 0.5)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(N)=O)NC(=O)[C@@H](N)CC(C)C)C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHHHH |
| Chou-Fasman (CF) | HHHHHHHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHHHHH |
| Joint/Consensus | HHHHHHHHHHHHHH |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Thi Phuong HB, et al. Reducing Self-Assembly by Increasing Net Charge: Effect on Biological Activity of Mastoparan C. ACS Med Chem Lett. 2024; 15:69-75. doi: 10.1021/acsmedchemlett.3c00385
Literature
Paper title : Reducing Self-Assembly by Increasing Net Charge: Effect on Biological Activity of Mastoparan C.
Doi : https://doi.org/10.1021/acsmedchemlett.3c00385
Abstract : The ability of amphipathic peptides to arrange themselves in aqueous solutions, known as self-assembly, has been found to reduce the effectiveness of these peptides in interacting with cell membranes. Therefore, minimizing their tendency to self-assemble could be a potential strategy for enhancing the pharmacological properties of antimicrobial peptides (AMPs). To explore this idea, this study prepared a series of natural peptides mastoparan C (MPC) with increased net charge and hydrophilicity via alanine-to-lysine substitution and investigated the impact on the biological activity. The preliminary data suggested the influence of both the overall positive charge and the position of a lysine residue on the self-assembly of MPC and its derivatives. Besides, the analogue MPC-A5K,A8K displayed higher anticancer activity and comparable antimicrobial activity with significantly lower hemolysis than MPC. Hence, reducing self-assembly by expanding the cationic area could be a promising approach for developing potent and selective AMPs.