dbacp04718
General Description
Peptide name : Multivalent DR5 binding peptides, TRAILmim/DR5 (2m)
Source/Organism : Not found
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : WDCLDNRIGKRQCVRL
Peptide length: 16
C-terminal modification: Linear
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Not specified
Assay time : Not found
Activity : Kd (Binding constants of TRAIL mimics): 664 ± 18 nMol/L
Cell line : HCT 116
Cancer type : Colon cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1975.3021 Dalton
Aliphatic index : 0.912
Instability index : 39.0938
Hydrophobicity (GRAVY) : -0.712
Isoelectric point : 8.9552
Charge (pH 7) : 1.7415
Aromaticity : 0.062
Molar extinction coefficient (cysteine, cystine): (5500, 5625)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : -0.032
Missing amino acid : H,T,P,M,E,F,S,Y,A
Most occurring amino acid : R
Most occurring amino acid frequency : 3
Least occurring amino acid : W
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.1, 0.2, 0.3)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CS)NC(=O)[C@H](CC(=O)O)NC(=O)[C@@H](N)Cc1c[nH]c2ccccc12)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(C)C)C(=O)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CHHHTTHHTCHEEEEE |
| Chou-Fasman (CF) | HHHHCEEECCEEECCC |
| Neural Network (NN) | CCCCCCCCCCCHEEEH |
| Joint/Consensus | CCCCCCCCCCCEEEEC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Pavet V, et al. Multivalent DR5 peptides activate the TRAIL death pathway and exert tumoricidal activity. Cancer Res. 2010; 70:1101-10. doi: 10.1158/0008-5472.CAN-09-2889
Literature
Paper title : Multivalent DR5 peptides activate the TRAIL death pathway and exert tumoricidal activity.
Doi : https://doi.org/10.1158/0008-5472.CAN-09-2889
Abstract : Ongoing clinical trials are exploring anticancer approaches based on signaling by TRAIL, a ligand for the cell death receptors DR4 and DR5. In this study, we report on the selective apoptotic effects of multivalent DR5 binding peptides (TRAIL(mim/DR5)) on cancer cells in vitro and in vivo. Surface plasmon resonance revealed up to several thousand-fold increased affinities of TRAIL(mim/DR5)-receptor complexes on generation of divalent and trivalent molecules, the latter of which was achieved with a conformationally restricted adamantane core. Notably, only multivalent molecules triggered a substantial DR5-dependent apoptotic response in vitro. In tumor models derived from human embryonic kidney cells or primary foreskin fibroblasts, TRAIL(mim/DR5) peptides exerted a cancer cell-selective action that could synergize with resveratrol in a manner independent of p53. In a xenograft model of human colon cancer, a divalent TRAIL(mim/DR5) peptide inhibited tumor growth. Our results offer a proof-of-principle for the development of synthetic small molecules to trigger the TRAIL apoptosis pathway for cancer therapy.