dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp04828

General Description

Peptide name : Neuropilin-1

Source/Organism : Human

Linear/Cyclic : Not found

Chirality : Not found

Sequence Information

Sequence : MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDNHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPADLDKKNPEIKIDETGSTPGYEGEGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSTYSEA

Peptide length: 923

C-terminal modification: Not found

N-terminal modification : Free

Non-natural peptide information: None

Activity Information

Assay type : Proliferation and chemotaxis assays

Assay time : 4days

Activity : Not found

Cell line : 231

Cancer type : Breast carcinoma

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 103133.160 Dalton

Aliphatic index : 0.725

Instability index : 35.5594

Hydrophobicity (GRAVY) : -0.441

Isoelectric point : 5.5826

Charge (pH 7) : -21.4813

Aromaticity : 0.102

Molar extinction coefficient (cysteine, cystine): (155620, 156995)

Hydrophobic/hydrophilic ratio : 0.96382978

hydrophobic moment : -0.017

Missing amino acid : None

Most occurring amino acid : G

Most occurring amino acid frequency : 86

Least occurring amino acid : W

Least occurring amino acid frequency : 18

Structural Information

3D structure : Not Available

Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)

SMILES Notation: 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(C)CC)[C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)C(C)C)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)C(C)C

Secondary Structure :

Method Prediction
GOR HHTTCCHHHHHHHHHHCHHHHHHTTTTTCCEEEECTTEEECTTCCCCCCTTTTHHHHHCCCCCCCEEEEECCCCCCHTTTTTTTTTEEEEHTTTTTTHHHTTETTCCCCCCCCCTCCEEEEEEETTTTTTTTTHHHHHHEETTCCTTTTTCCCCCEEEECTCCCTCCTTTTTEEEEEECCTHHHHHHHHHHHTCCTTTCCTTCEEEHTTTTTEETTCCTCCCCEEEETTTCCCCEEEETTTEEEEEEECHHHHHHHTHHHTEEEEETCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHTHTTTCTTTTCCCTTTHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHEEEEEEEETTTTCHHEEHHTTCCCEEEETCCCCCEEEEEECCCCCHEEEEEECTTCCHTTHHHHHHETTTCCCCCTTTTCEEEEEEEEEEEEEEECCTTCCTTCTTHHHEEEEETTEECCTCCCCEEEHHHHHHHHHHHHEEEEEEETCCHHHHHHHHHHHEETCCTTTCTHHHHHHHHHHHHTEETTTTTTCCCTEECCCTTTHEEEEECTTTHTTTTCCCEHHHTTHHHTCCCCCCCCCCCCCEECCHTTTTTTTTTCCCCEEEETCCEEEETTCCEEEECEEETTCCCTTTEHETTTTTTTHHHHHTHHTHHHHHEEEEETECCCEEECCTTCCEEEEHHHHHHTTHEEEEEEEEEEETTTTHEEEEHHETTTCCTTEEEHHHTTTCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHHTTTCCTCEEEEEHEECCCCCHHHHHCHHHHTTTCCHHEEETTTCCCCCTTTTTTHHHHHTCTTCCEEECCCEEEEEEHHHHHCEEEEEEEEEEEEEETTTTTCHHHHHTHHHTTHHHHHHHHHHHHTTTTTTCCEETT
Chou-Fasman (CF) CCCCCCCEEHHHHHHHCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEECEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCCEEEEECCCCCEEEECCEEEEEEEEEECHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHEEEEEEEECEEHHHHHHHEEEEEEEEEEEECCCCCEEEHHHHCCEEEECCCCCCEEEEEEEECCEEEEEEEECCCCCCCEEEECCCEEECEEEECCCCCCCCEEEEEEEECEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHEEEEEEEECCCHHHHCCCHHHHEEECCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECHHHHCCCCCCEEEHHHHHCEECCCEEEEEECCEECCCCCCCCEEEEEHHHHHCHHHHHHEEEEEEECCHHHHEEEEEEECCCEEEEEEHHHHCCCHHHHHHHEEHHHHCCCCCHHHHHEEEHHHHHHHEEEECCCCCCCCCCEEEECCCEECCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCCEEEEEEEEHHHHEEEECEEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHEECCHHHHHHHCCEEEECCCC
Neural Network (NN) CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCECCCCCCCCEEECCCEEEEEEECCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHCCCCHHECEEEEEEECCCCCCEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEHCCCCHHHHHHHEEECCCCCCCECCCCCCCEEECCCCCCCCCCHEEECCCEEECCCCCHHHEEEEECCCCCCCEEEHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHEEEEEHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC
Joint/Consensus CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHCCCCCCCCCCCCEECCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEECHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHCCCEEEEEEEEECCCCCCEEECCCCCCCEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEECHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCEEEEEEEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Not available.

ADMET Properties: Not available.

Cross Referencing databases

Pubmed Id : 9288753 9529250

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : He Z and Tessier-Lavigne M. Neuropilin is a receptor for the axonal chemorepellent Semaphorin III. Cell. 1997; 90:739-51. doi: 10.1016/s0092-8674(00)80534-6

2 : Soker S, et al. Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor. Cell. 1998; 92:735-45. doi: 10.1016/s0092-8674(00)81402-6

Literature

Paper title : Neuropilin is a receptor for the axonal chemorepellent Semaphorin III.

Doi : https://doi.org/10.1016/s0092-8674(00)80534-6

Abstract : Extending axons in the developing nervous system are guided to their targets through the coordinate actions of attractive and repulsive guidance cues. The semaphorin family of guidance cues comprises several members that can function as diffusible axonal chemorepellents. To begin to elucidate the mechanisms that mediate the repulsive actions of Collapsin-1/Semaphorin III/D (Sema III), we searched for Sema III-binding proteins in embryonic rat sensory neurons by expression cloning. We report that Sema III binds with high affinity to the transmembrane protein neuropilin, and that antibodies to neuropilin block the ability of Sema III to repel sensory axons and to induce collapse of their growth cones. These results provide evidence that neuropilin is a receptor or a component of a receptor complex that mediates the effects of Sema III on these axons.

Paper title : Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor.

Doi : https://doi.org/10.1016/s0092-8674(00)81402-6

Abstract : Vascular endothelial growth factor (VEGF), a major regulator of angiogenesis, binds to two receptor tyrosine kinases, KDR/Flk-1 and Flt-1. We now describe the purification and the expression cloning from tumor cells of a third VEGF receptor, one that binds VEGF165 but not VEGF121. This isoform-specific VEGF receptor (VEGF165R) is identical to human neuropilin-1, a receptor for the collapsin/semaphorin family that mediates neuronal cell guidance. When coexpressed in cells with KDR, neuropilin-1 enhances the binding of VEGF165 to KDR and VEGF165-mediated chemotaxis. Conversely, inhibition of VEGF165 binding to neuropilin-1 inhibits its binding to KDR and its mitogenic activity for endothelial cells. We propose that neuropilin-1 is a novel VEGF receptor that modulates VEGF binding to KDR and subsequent bioactivity and therefore may regulate VEGF-induced angiogenesis.