dbacp04828
General Description
Peptide name : Neuropilin-1
Source/Organism : Human
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDNHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPADLDKKNPEIKIDETGSTPGYEGEGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSTYSEA
Peptide length: 923
C-terminal modification: Not found
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : Proliferation and chemotaxis assays
Assay time : 4days
Activity : Not found
Cell line : 231
Cancer type : Breast carcinoma
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 103133.160 Dalton
Aliphatic index : 0.725
Instability index : 35.5594
Hydrophobicity (GRAVY) : -0.441
Isoelectric point : 5.5826
Charge (pH 7) : -21.4813
Aromaticity : 0.102
Molar extinction coefficient (cysteine, cystine): (155620, 156995)
Hydrophobic/hydrophilic ratio : 0.96382978
hydrophobic moment : -0.017
Missing amino acid : None
Most occurring amino acid : G
Most occurring amino acid frequency : 86
Least occurring amino acid : W
Least occurring amino acid frequency : 18
Structural Information
3D structure : Not Available
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)
SMILES Notation: 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(C)CC)[C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)C(C)C)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHTTCCHHHHHHHHHHCHHHHHHTTTTTCCEEEECTTEEECTTCCCCCCTTTTHHHHHCCCCCCCEEEEECCCCCCHTTTTTTTTTEEEEHTTTTTTHHHTTETTCCCCCCCCCTCCEEEEEEETTTTTTTTTHHHHHHEETTCCTTTTTCCCCCEEEECTCCCTCCTTTTTEEEEEECCTHHHHHHHHHHHTCCTTTCCTTCEEEHTTTTTEETTCCTCCCCEEEETTTCCCCEEEETTTEEEEEEECHHHHHHHTHHHTEEEEETCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHTHTTTCTTTTCCCTTTHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHEEEEEEEETTTTCHHEEHHTTCCCEEEETCCCCCEEEEEECCCCCHEEEEEECTTCCHTTHHHHHHETTTCCCCCTTTTCEEEEEEEEEEEEEEECCTTCCTTCTTHHHEEEEETTEECCTCCCCEEEHHHHHHHHHHHHEEEEEEETCCHHHHHHHHHHHEETCCTTTCTHHHHHHHHHHHHTEETTTTTTCCCTEECCCTTTHEEEEECTTTHTTTTCCCEHHHTTHHHTCCCCCCCCCCCCCEECCHTTTTTTTTTCCCCEEEETCCEEEETTCCEEEECEEETTCCCTTTEHETTTTTTTHHHHHTHHTHHHHHEEEEETECCCEEECCTTCCEEEEHHHHHHTTHEEEEEEEEEEETTTTHEEEEHHETTTCCTTEEEHHHTTTCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHHTTTCCTCEEEEEHEECCCCCHHHHHCHHHHTTTCCHHEEETTTCCCCCTTTTTTHHHHHTCTTCCEEECCCEEEEEEHHHHHCEEEEEEEEEEEEEETTTTTCHHHHHTHHHTTHHHHHHHHHHHHTTTTTTCCEETT |
| Chou-Fasman (CF) | CCCCCCCEEHHHHHHHCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEECEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCCEEEEECCCCCEEEECCEEEEEEEEEECHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHEEEEEEEECEEHHHHHHHEEEEEEEEEEEECCCCCEEEHHHHCCEEEECCCCCCEEEEEEEECCEEEEEEEECCCCCCCEEEECCCEEECEEEECCCCCCCCEEEEEEEECEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHEEEEEEEECCCHHHHCCCHHHHEEECCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECHHHHCCCCCCEEEHHHHHCEECCCEEEEEECCEECCCCCCCCEEEEEHHHHHCHHHHHHEEEEEEECCHHHHEEEEEEECCCEEEEEEHHHHCCCHHHHHHHEEHHHHCCCCCHHHHHEEEHHHHHHHEEEECCCCCCCCCCEEEECCCEECCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCCEEEEEEEEHHHHEEEECEEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHEECCHHHHHHHCCEEEECCCC |
| Neural Network (NN) | CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCECCCCCCCCEEECCCEEEEEEECCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHCCCCHHECEEEEEEECCCCCCEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEHCCCCHHHHHHHEEECCCCCCCECCCCCCCEEECCCCCCCCCCHEEECCCEEECCCCCHHHEEEEECCCCCCCEEEHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHEEEEEHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC |
| Joint/Consensus | CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHCCCCCCCCCCCCEECCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEECHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHCCCEEEEEEEEECCCCCCEEECCCCCCCEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEECHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCEEEEEEEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Not available.
ADMET Properties: Not available.
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : He Z and Tessier-Lavigne M. Neuropilin is a receptor for the axonal chemorepellent Semaphorin III. Cell. 1997; 90:739-51. doi: 10.1016/s0092-8674(00)80534-6
2 : Soker S, et al. Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor. Cell. 1998; 92:735-45. doi: 10.1016/s0092-8674(00)81402-6
Literature
Paper title : Neuropilin is a receptor for the axonal chemorepellent Semaphorin III.
Doi : https://doi.org/10.1016/s0092-8674(00)80534-6
Abstract : Extending axons in the developing nervous system are guided to their targets through the coordinate actions of attractive and repulsive guidance cues. The semaphorin family of guidance cues comprises several members that can function as diffusible axonal chemorepellents. To begin to elucidate the mechanisms that mediate the repulsive actions of Collapsin-1/Semaphorin III/D (Sema III), we searched for Sema III-binding proteins in embryonic rat sensory neurons by expression cloning. We report that Sema III binds with high affinity to the transmembrane protein neuropilin, and that antibodies to neuropilin block the ability of Sema III to repel sensory axons and to induce collapse of their growth cones. These results provide evidence that neuropilin is a receptor or a component of a receptor complex that mediates the effects of Sema III on these axons.
Paper title : Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor.
Doi : https://doi.org/10.1016/s0092-8674(00)81402-6
Abstract : Vascular endothelial growth factor (VEGF), a major regulator of angiogenesis, binds to two receptor tyrosine kinases, KDR/Flk-1 and Flt-1. We now describe the purification and the expression cloning from tumor cells of a third VEGF receptor, one that binds VEGF165 but not VEGF121. This isoform-specific VEGF receptor (VEGF165R) is identical to human neuropilin-1, a receptor for the collapsin/semaphorin family that mediates neuronal cell guidance. When coexpressed in cells with KDR, neuropilin-1 enhances the binding of VEGF165 to KDR and VEGF165-mediated chemotaxis. Conversely, inhibition of VEGF165 binding to neuropilin-1 inhibits its binding to KDR and its mitogenic activity for endothelial cells. We propose that neuropilin-1 is a novel VEGF receptor that modulates VEGF binding to KDR and subsequent bioactivity and therefore may regulate VEGF-induced angiogenesis.