dbacp04829
General Description
Peptide name : Neuropilin-1
Source/Organism : Human
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDNHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPADLDKKNPEIKIDETGSTPGYEGEGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSTYSEA
Peptide length: 923
C-terminal modification: Not found
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : Proliferation and chemotaxis assays
Assay time : 5days
Activity : Not found
Cell line : PC3
Cancer type : Prostate carcinoma
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 103133.160 Dalton
Aliphatic index : 0.725
Instability index : 35.5594
Hydrophobicity (GRAVY) : -0.441
Isoelectric point : 5.5826
Charge (pH 7) : -21.4813
Aromaticity : 0.102
Molar extinction coefficient (cysteine, cystine): (155620, 156995)
Hydrophobic/hydrophilic ratio : 0.96382978
hydrophobic moment : -0.017
Missing amino acid : None
Most occurring amino acid : G
Most occurring amino acid frequency : 86
Least occurring amino acid : W
Least occurring amino acid frequency : 18
Structural Information
3D structure : Not Available
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)
SMILES Notation: 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(C)CC)[C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)C(C)C)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHTTCCHHHHHHHHHHCHHHHHHTTTTTCCEEEECTTEEECTTCCCCCCTTTTHHHHHCCCCCCCEEEEECCCCCCHTTTTTTTTTEEEEHTTTTTTHHHTTETTCCCCCCCCCTCCEEEEEEETTTTTTTTTHHHHHHEETTCCTTTTTCCCCCEEEECTCCCTCCTTTTTEEEEEECCTHHHHHHHHHHHTCCTTTCCTTCEEEHTTTTTEETTCCTCCCCEEEETTTCCCCEEEETTTEEEEEEECHHHHHHHTHHHTEEEEETCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHTHTTTCTTTTCCCTTTHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHEEEEEEEETTTTCHHEEHHTTCCCEEEETCCCCCEEEEEECCCCCHEEEEEECTTCCHTTHHHHHHETTTCCCCCTTTTCEEEEEEEEEEEEEEECCTTCCTTCTTHHHEEEEETTEECCTCCCCEEEHHHHHHHHHHHHEEEEEEETCCHHHHHHHHHHHEETCCTTTCTHHHHHHHHHHHHTEETTTTTTCCCTEECCCTTTHEEEEECTTTHTTTTCCCEHHHTTHHHTCCCCCCCCCCCCCEECCHTTTTTTTTTCCCCEEEETCCEEEETTCCEEEECEEETTCCCTTTEHETTTTTTTHHHHHTHHTHHHHHEEEEETECCCEEECCTTCCEEEEHHHHHHTTHEEEEEEEEEEETTTTHEEEEHHETTTCCTTEEEHHHTTTCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHHTTTCCTCEEEEEHEECCCCCHHHHHCHHHHTTTCCHHEEETTTCCCCCTTTTTTHHHHHTCTTCCEEECCCEEEEEEHHHHHCEEEEEEEEEEEEEETTTTTCHHHHHTHHHTTHHHHHHHHHHHHTTTTTTCCEETT |
| Chou-Fasman (CF) | CCCCCCCEEHHHHHHHCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEECEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCCEEEEECCCCCEEEECCEEEEEEEEEECHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHEEEEEEEECEEHHHHHHHEEEEEEEEEEEECCCCCEEEHHHHCCEEEECCCCCCEEEEEEEECCEEEEEEEECCCCCCCEEEECCCEEECEEEECCCCCCCCEEEEEEEECEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHEEEEEEEECCCHHHHCCCHHHHEEECCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECHHHHCCCCCCEEEHHHHHCEECCCEEEEEECCEECCCCCCCCEEEEEHHHHHCHHHHHHEEEEEEECCHHHHEEEEEEECCCEEEEEEHHHHCCCHHHHHHHEEHHHHCCCCCHHHHHEEEHHHHHHHEEEECCCCCCCCCCEEEECCCEECCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCCEEEEEEEEHHHHEEEECEEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHEECCHHHHHHHCCEEEECCCC |
| Neural Network (NN) | CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCECCCCCCCCEEECCCEEEEEEECCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHCCCCHHECEEEEEEECCCCCCEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEHCCCCHHHHHHHEEECCCCCCCECCCCCCCEEECCCCCCCCCCHEEECCCEEECCCCCHHHEEEEECCCCCCCEEEHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHEEEEEHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC |
| Joint/Consensus | CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHCCCCCCCCCCCCEECCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEECHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHCCCEEEEEEEEECCCCCCEEECCCCCCCEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEECHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCEEEEEEEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Not available.
ADMET Properties: Not available.
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Hamman BD, et al. BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation. Cell. 1998; 92:747-58. doi: 10.1016/s0092-8674(00)81403-8
2 : He Z and Tessier-Lavigne M. Neuropilin is a receptor for the axonal chemorepellent Semaphorin III. Cell. 1997; 90:739-51. doi: 10.1016/s0092-8674(00)80534-6
Literature
Paper title : BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation.
Doi : https://doi.org/10.1016/s0092-8674(00)81403-8
Abstract : Secretory proteins are cotranslationally translocated across the mammalian ER membrane through an aqueous pore in the translocon while the permeability barrier is maintained by a tight ribosome-membrane junction. The lumenal end of the pore is also blocked early in translocation. Extraction of soluble lumenal proteins from microsomes and reconstitution with purified proteins demonstrate, by fluorescence collisional quenching, that BiP seals the lumenal end of this pore. BiP also seals translocons that are assembled but are not engaged in translocation. These ribosome-free translocons have smaller pores (9-15 A diameter versus 40-60 A in functioning translocons) and are generated when ribosomes dissociate from functioning translocons with large pores. BiP therefore maintains the permeability barrier by sealing both nontranslocating and newly targeted translocons.
Paper title : Neuropilin is a receptor for the axonal chemorepellent Semaphorin III.
Doi : https://doi.org/10.1016/s0092-8674(00)80534-6
Abstract : Extending axons in the developing nervous system are guided to their targets through the coordinate actions of attractive and repulsive guidance cues. The semaphorin family of guidance cues comprises several members that can function as diffusible axonal chemorepellents. To begin to elucidate the mechanisms that mediate the repulsive actions of Collapsin-1/Semaphorin III/D (Sema III), we searched for Sema III-binding proteins in embryonic rat sensory neurons by expression cloning. We report that Sema III binds with high affinity to the transmembrane protein neuropilin, and that antibodies to neuropilin block the ability of Sema III to repel sensory axons and to induce collapse of their growth cones. These results provide evidence that neuropilin is a receptor or a component of a receptor complex that mediates the effects of Sema III on these axons.