dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp04829

General Description

Peptide name : Neuropilin-1

Source/Organism : Human

Linear/Cyclic : Not found

Chirality : Not found

Sequence Information

Sequence : MERGLPLLCAVLALVLAPAGAFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCKYDYVEVFDGENENGHFRGKFCGKIAPPPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKRGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFVPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLITRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSSNQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPELRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVEAPTAGPTTPNGNLVDECDDDQANCHSGTGDDFQLTGGTTVLATEKPTVIDSTIQSEFPTYGFNCEFGWGSHKTFCHWEHDNHVQLKWSVLTSKTGPIQDHTGDGNFIYSQADENQKGKVARLVSPVVYSQNSAHCMTFWYHMSGSHVGTLRVKLRYQKPEEYDQLVWMAIGHQGDHWKEGRVLLHKSLKLYQVIFEGEIGKGNLGGIAVDDISINNHISQEDCAKPADLDKKNPEIKIDETGSTPGYEGEGEGDKNISRKPGNVLKTLDPILITIIAMSALGVLLGAVCGVVLYCACWHNGMSERNLSALENYNFELVDGVKLKKDKLNTQSTYSEA

Peptide length: 923

C-terminal modification: Not found

N-terminal modification : Free

Non-natural peptide information: None

Activity Information

Assay type : Proliferation and chemotaxis assays

Assay time : 5days

Activity : Not found

Cell line : PC3

Cancer type : Prostate carcinoma

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 103133.160 Dalton

Aliphatic index : 0.725

Instability index : 35.5594

Hydrophobicity (GRAVY) : -0.441

Isoelectric point : 5.5826

Charge (pH 7) : -21.4813

Aromaticity : 0.102

Molar extinction coefficient (cysteine, cystine): (155620, 156995)

Hydrophobic/hydrophilic ratio : 0.96382978

hydrophobic moment : -0.017

Missing amino acid : None

Most occurring amino acid : G

Most occurring amino acid frequency : 86

Least occurring amino acid : W

Least occurring amino acid frequency : 18

Structural Information

3D structure : Not Available

Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)

SMILES Notation: 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(C)CC)[C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(=O)O)C(=O)N1CCC[C@H]1C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](CCSC)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)C(C)C)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)C(C)C

Secondary Structure :

Method Prediction
GOR HHTTCCHHHHHHHHHHCHHHHHHTTTTTCCEEEECTTEEECTTCCCCCCTTTTHHHHHCCCCCCCEEEEECCCCCCHTTTTTTTTTEEEEHTTTTTTHHHTTETTCCCCCCCCCTCCEEEEEEETTTTTTTTTHHHHHHEETTCCTTTTTCCCCCEEEECTCCCTCCTTTTTEEEEEECCTHHHHHHHHHHHTCCTTTCCTTCEEEHTTTTTEETTCCTCCCCEEEETTTCCCCEEEETTTEEEEEEECHHHHHHHTHHHTEEEEETCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHTHTTTCTTTTCCCTTTHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHEEEEEEEETTTTCHHEEHHTTCCCEEEETCCCCCEEEEEECCCCCHEEEEEECTTCCHTTHHHHHHETTTCCCCCTTTTCEEEEEEEEEEEEEEECCTTCCTTCTTHHHEEEEETTEECCTCCCCEEEHHHHHHHHHHHHEEEEEEETCCHHHHHHHHHHHEETCCTTTCTHHHHHHHHHHHHTEETTTTTTCCCTEECCCTTTHEEEEECTTTHTTTTCCCEHHHTTHHHTCCCCCCCCCCCCCEECCHTTTTTTTTTCCCCEEEETCCEEEETTCCEEEECEEETTCCCTTTEHETTTTTTTHHHHHTHHTHHHHHEEEEETECCCEEECCTTCCEEEEHHHHHHTTHEEEEEEEEEEETTTTHEEEEHHETTTCCTTEEEHHHTTTCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEHHHHTTTCCTCEEEEEHEECCCCCHHHHHCHHHHTTTCCHHEEETTTCCCCCTTTTTTHHHHHTCTTCCEEECCCEEEEEEHHHHHCEEEEEEEEEEEEEETTTTTCHHHHHTHHHTTHHHHHHHHHHHHTTTTTTCCEETT
Chou-Fasman (CF) CCCCCCCEEHHHHHHHCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEECEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCCEEEEECCCCCEEEECCEEEEEEEEEECHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECHHHHHCCCCCCCEEECCCCCCCCCEECCHHHHEEEEEEEECEEHHHHHHHEEEEEEEEEEEECCCCCEEEHHHHCCEEEECCCCCCEEEEEEEECCEEEEEEEECCCCCCCEEEECCCEEECEEEECCCCCCCCEEEEEEEECEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHEEEEEEEECCCHHHHCCCHHHHEEECCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECHHHHCCCCCCEEEHHHHHCEECCCEEEEEECCEECCCCCCCCEEEEEHHHHHCHHHHHHEEEEEEECCHHHHEEEEEEECCCEEEEEEHHHHCCCHHHHHHHEEHHHHCCCCCHHHHHEEEHHHHHHHEEEECCCCCCCCCCEEEECCCEECCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCEECCCCCCCCCCEEEEEEEEHHHHEEEECEEEEEEEECCCCCCCCCCCCCHHHHHCCHHHHEECCHHHHHHHCCEEEECCCC
Neural Network (NN) CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCECCCCCCCCCCCCCCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCECCCCCCCCEEECCCEEEEEEECCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHCCCCHHECEEEEEEECCCCCCEEEECCCCCCCEECCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCHCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEHCCCCHHHHHHHEEECCCCCCCECCCCCCCEEECCCCCCCCCCHEEECCCEEECCCCCHHHEEEEECCCCCCCEEEHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCHEEEEEHHCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC
Joint/Consensus CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHCCCCCCCCCCCCEECCCCCCEECCCCCCCCCEEEECCCCCCCEEEECCCEEEEEEECHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHCCCEEEEEEEEECCCCCCEEECCCCCCCEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCCEEECHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCEEEEEEEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Not available.

ADMET Properties: Not available.

Cross Referencing databases

Pubmed Id : 9288753 9529251

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Hamman BD, et al. BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation. Cell. 1998; 92:747-58. doi: 10.1016/s0092-8674(00)81403-8

2 : He Z and Tessier-Lavigne M. Neuropilin is a receptor for the axonal chemorepellent Semaphorin III. Cell. 1997; 90:739-51. doi: 10.1016/s0092-8674(00)80534-6

Literature

Paper title : BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation.

Doi : https://doi.org/10.1016/s0092-8674(00)81403-8

Abstract : Secretory proteins are cotranslationally translocated across the mammalian ER membrane through an aqueous pore in the translocon while the permeability barrier is maintained by a tight ribosome-membrane junction. The lumenal end of the pore is also blocked early in translocation. Extraction of soluble lumenal proteins from microsomes and reconstitution with purified proteins demonstrate, by fluorescence collisional quenching, that BiP seals the lumenal end of this pore. BiP also seals translocons that are assembled but are not engaged in translocation. These ribosome-free translocons have smaller pores (9-15 A diameter versus 40-60 A in functioning translocons) and are generated when ribosomes dissociate from functioning translocons with large pores. BiP therefore maintains the permeability barrier by sealing both nontranslocating and newly targeted translocons.

Paper title : Neuropilin is a receptor for the axonal chemorepellent Semaphorin III.

Doi : https://doi.org/10.1016/s0092-8674(00)80534-6

Abstract : Extending axons in the developing nervous system are guided to their targets through the coordinate actions of attractive and repulsive guidance cues. The semaphorin family of guidance cues comprises several members that can function as diffusible axonal chemorepellents. To begin to elucidate the mechanisms that mediate the repulsive actions of Collapsin-1/Semaphorin III/D (Sema III), we searched for Sema III-binding proteins in embryonic rat sensory neurons by expression cloning. We report that Sema III binds with high affinity to the transmembrane protein neuropilin, and that antibodies to neuropilin block the ability of Sema III to repel sensory axons and to induce collapse of their growth cones. These results provide evidence that neuropilin is a receptor or a component of a receptor complex that mediates the effects of Sema III on these axons.