dbacp05036
General Description
Peptide name : p120RasGAP (317-326)
Source/Organism : Not found
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : WMWVTNLRTD
Peptide length: 10
C-terminal modification: Linear
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : Luciferase assay
Assay time : Not found
Activity : Not found
Cell line : MCF-7
Cancer type : Human malignant mesothelomia
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1321.5032 Dalton
Aliphatic index : 0.68
Instability index : 19.93
Hydrophobicity (GRAVY) : -0.48
Isoelectric point : 6.0877
Charge (pH 7) : -0.2356
Aromaticity : 0.2
Molar extinction coefficient (cysteine, cystine): (11000, 11000)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : 0.1111
Missing amino acid : C,H,Q,P,I,E,K,S,F,Y,A,G
Most occurring amino acid : W
Most occurring amino acid frequency : 2
Least occurring amino acid : M
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.2, 0.6)
SMILES Notation: CSCC[C@H](NC(=O)[C@@H](N)Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EEEEHTHHCC |
| Chou-Fasman (CF) | EEEEEECCCC |
| Neural Network (NN) | EEEEECCCCC |
| Joint/Consensus | EEEEECCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Michod D, et al. A RasGAP-derived cell permeable peptide potently enhances genotoxin-induced cytotoxicity in tumor cells. Oncogene. 2004; 23:8971-8. doi: 10.1038/sj.onc.1207999
Literature
Paper title : A RasGAP-derived cell permeable peptide potently enhances genotoxin-induced cytotoxicity in tumor cells.
Doi : https://doi.org/10.1038/sj.onc.1207999
Abstract : Treatment of many cancers relies on the combined action of several genotoxins, but the detrimental effect of these drugs on normal cells can cause severe side effects. One major challenge in anticancer therapy is therefore to increase the selectivity of current treatments toward cancer cells in order to spare normal cells. We have recently demonstrated that a RasGAP caspase cleavage fragment is able to sensitize HeLa cells towards cisplatin-induced apoptosis. Here, we extend this observation by showing that this fragment also enhances cell death induced by adriamycin and mitoxantrone, two other widely used genotoxins. Furthermore, we have delineated a short sequence within this fragment that still bears the genotoxin-sensitization property. The peptide encoded by this sequence, when fused to the TAT cell permeation sequence, potently sensitized a number of tumors cells, but not normal cells, towards apoptosis induced by cisplatin, adriamycin and mitoxantrone. This sensitization effect was not mediated through modulation of NFkappaB activity or activation of the JNK and p38 MAPK pathways. Our results demonstrate the feasibility in enhancing the efficacy of currently used drugs to selectively kill cancer cells using peptides derived from pro-apoptotic caspase substrate fragments.