dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp05069

General Description

Peptide name : P369-CTL-A2xneu

Source/Organism : Synthetic Peptide

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : KIFGSLAFL

Peptide length: 9

C-terminal modification: Linear

N-terminal modification : Free

Non-natural peptide information: None

Activity Information

Assay type : Peptide dose curve assay

Assay time : Not found

Activity : 10% Inhibition at 10-7 M

Cell line : N202.A2

Cancer type : Tumor

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 995.2145 Dalton

Aliphatic index : 1.411

Instability index : -0.5444

Hydrophobicity (GRAVY) : 1.6

Isoelectric point : 8.7501

Charge (pH 7) : 0.7591

Aromaticity : 0.222

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 3.5

hydrophobic moment : -0.960

Missing amino acid : C,R,W,H,Q,T,P,M,E,D,Y,N,V

Most occurring amino acid : F

Most occurring amino acid frequency : 2

Least occurring amino acid : K

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.4, 0.2, 0.5)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(C)C)C(=O)O

Secondary Structure :

Method Prediction
GOR HHHCHHHHH
Chou-Fasman (CF) EEECCCCCC
Neural Network (NN) HCCCCHHHH
Joint/Consensus CCCCCHHHH

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 14991605

Uniprot : Not available

PDB : Not available

CancerPPD : Click here

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Lustgarten J, et al. The CD8+ T cell repertoire against Her-2/neu antigens in neu transgenic mice is of low avidity with antitumor activity. Eur J Immunol. 2004; 34:752-761. doi: 10.1002/eji.200324427

Literature

Paper title : The CD8+ T cell repertoire against Her-2/neu antigens in neu transgenic mice is of low avidity with antitumor activity.

Doi : https://doi.org/10.1002/eji.200324427

Abstract : The majority of tumor-associated antigens are aberrantly expressed or overexpressed normal gene products. Therefore, mechanisms responsible for self tolerance dampen immune responses against these antigens. To evaluate the effect that tolerance has on the immune responses against tumor antigens, we characterized the CD8+ T cell responses in neu mice. T cell responses against the A2.1/neu p369-377 and p773-782 peptides were evaluated in neu mice that were crossed with A2.1/Kb transgenic mice (A2 x neu). Tetramer binding and cytotoxic activity demonstrate that, compared to CTL from A2.1/Kb x FVB wild-type mice (A2 x FVB), CD8+ T cells from A2 x neu mice were of lower avidity for the peptides. Despite the fact that A2 x neu mice are tolerant, multiple immunizations with DC pulsed with the p369-377 or p773-782 peptides in the presence of IL-2 retarded tumor growth in A2 x neu mice, and immunizations in combination with the anti-OX40 mAb further enhanced the antitumor response. Taken together, these data indicate that low-avidity T cells for neu antigens persisting in A2 x neu mice have the capacity to develop antitumor responses as long as they are provided with efficient costimulation. These results underscore the potential role of low-avidity T cells in antitumor immunity and may offer an important component for vaccination immunotherapies.