dbacp05069
General Description
Peptide name : P369-CTL-A2xneu
Source/Organism : Synthetic Peptide
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : KIFGSLAFL
Peptide length: 9
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information: None
Activity Information
Assay type : Peptide dose curve assay
Assay time : Not found
Activity : 10% Inhibition at 10-7 M
Cell line : N202.A2
Cancer type : Tumor
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 995.2145 Dalton
Aliphatic index : 1.411
Instability index : -0.5444
Hydrophobicity (GRAVY) : 1.6
Isoelectric point : 8.7501
Charge (pH 7) : 0.7591
Aromaticity : 0.222
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 3.5
hydrophobic moment : -0.960
Missing amino acid : C,R,W,H,Q,T,P,M,E,D,Y,N,V
Most occurring amino acid : F
Most occurring amino acid frequency : 2
Least occurring amino acid : K
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.4, 0.2, 0.5)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(C)C)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHCHHHHH |
| Chou-Fasman (CF) | EEECCCCCC |
| Neural Network (NN) | HCCCCHHHH |
| Joint/Consensus | CCCCCHHHH |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Lustgarten J, et al. The CD8+ T cell repertoire against Her-2/neu antigens in neu transgenic mice is of low avidity with antitumor activity. Eur J Immunol. 2004; 34:752-761. doi: 10.1002/eji.200324427
Literature
Paper title : The CD8+ T cell repertoire against Her-2/neu antigens in neu transgenic mice is of low avidity with antitumor activity.
Doi : https://doi.org/10.1002/eji.200324427
Abstract : The majority of tumor-associated antigens are aberrantly expressed or overexpressed normal gene products. Therefore, mechanisms responsible for self tolerance dampen immune responses against these antigens. To evaluate the effect that tolerance has on the immune responses against tumor antigens, we characterized the CD8+ T cell responses in neu mice. T cell responses against the A2.1/neu p369-377 and p773-782 peptides were evaluated in neu mice that were crossed with A2.1/Kb transgenic mice (A2 x neu). Tetramer binding and cytotoxic activity demonstrate that, compared to CTL from A2.1/Kb x FVB wild-type mice (A2 x FVB), CD8+ T cells from A2 x neu mice were of lower avidity for the peptides. Despite the fact that A2 x neu mice are tolerant, multiple immunizations with DC pulsed with the p369-377 or p773-782 peptides in the presence of IL-2 retarded tumor growth in A2 x neu mice, and immunizations in combination with the anti-OX40 mAb further enhanced the antitumor response. Taken together, these data indicate that low-avidity T cells for neu antigens persisting in A2 x neu mice have the capacity to develop antitumor responses as long as they are provided with efficient costimulation. These results underscore the potential role of low-avidity T cells in antitumor immunity and may offer an important component for vaccination immunotherapies.