dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp05556

General Description

Peptide name : Picturin 1BN

Source/Organism : Norepinephrine-stimulated skin secretion, the Giant Gladiator Treefrog, the Rusty Treefrog, Trinidad, South America

Linear/Cyclic : Linear

Chirality : Not found

Sequence Information

Sequence : GIFKDTLKKVVAAVLTTVADNIHPK

Peptide length: 25

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : LC50 : 7 - 14 µM

Cell line : MDA-MB-231

Cancer type : Breast adenocarcinoma

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2679.1613 Dalton

Aliphatic index : 1.208

Instability index : 5.352

Hydrophobicity (GRAVY) : 0.328

Isoelectric point : 9.5284

Charge (pH 7) : 1.8455

Aromaticity : 0.04

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 1.27272727

hydrophobic moment : -0.355

Missing amino acid : C,R,W,Q,M,E,S,Y

Most occurring amino acid : K

Most occurring amino acid frequency : 4

Least occurring amino acid : G

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.3, 0.2, 0.4)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)CN)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCCN)C(=O)O)[C@@H](C)CC)C(C)C)[C@@H](C)O)[C@@H](C)O)C(C)C)C(C)C)C(C)C)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHEEEEEEEEECTCCCT
Chou-Fasman (CF) CHHHHHHEEEECEEEEECCCCCCCC
Neural Network (NN) CCCCCCHHHHHHHHHHHHCCCCCCC
Joint/Consensus CHHHHHHHHHEEEEEEECCCCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 37508198

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

1 : Conlon JM, et al. Purification, Conformational Analysis and Cytotoxic Activities of Host-Defense Peptides from the Giant Gladiator Treefrog Boana boans (Hylidae: Hylinae). Antibiotics (Basel). 2023; 12:(unknown pages). doi: 10.3390/antibiotics12071102

Literature

Paper title : Purification, Conformational Analysis and Cytotoxic Activities of Host-Defense Peptides from the Giant Gladiator Treefrog Boana boans (Hylidae: Hylinae).

Doi : https://doi.org/10.3390/antibiotics12071102

Abstract : Frogs from the extensive amphibian family Hylidae are a rich source of peptides with therapeutic potential. Peptidomic analysis of norepinephrine-stimulated skin secretions from the Giant Gladiator Treefrog Boana boans (Hylidae: Hylinae) collected in Trinidad led to the isolation and structural characterization of five host-defense peptides with limited structural similarity to figainin 2 and picturin peptides from other frog species belonging to the genus Boana. In addition, the skin secretions contained high concentrations of tryptophyllin-BN (WRPFPFL) in both C-terminally α-amidated and non-amidated forms. Figainin 2BN (FLGVALKLGKVLG KALLPLASSLLHSQ) and picturin 1BN (GIFKDTLKKVVAAVLTTVADNIHPK) adopt α-helical conformations in trifluroethanol-water mixtures and in the presence of cell membrane models (sodium dodecylsulfate and dodecylphosphocholine micelles). The CD data also indicate contributions from turn structures. Both peptides and picturin 2BN (GLMDMLKKVGKVALT VAKSALLP) inhibited the growth of clinically relevant Gram-negative and Gram-positive bacteria with MIC values in the range 7.8-62.5 µM. Figainin 2BN was potently cytotoxic to A549, MDA-MB-231 and HT-29 human tumor-derived cells (LC<sub>50</sub> = 7-14 µM) but displayed comparable potency against non-neoplastic HUVEC cells (LC<sub>50</sub> = 15 µM) indicative of lack of selectivity for cancer cells.