dbacp06027
General Description
Peptide name : SCH-P10
Source/Organism : Marine invertebrates
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : DYVP
Peptide length: 4
C-terminal modification: Linear
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : MTT assay
Assay time : 24h
Activity : IC50 : 1.21 mg/mL
Cell line : DU-145
Cancer type : Prostate cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 492.5221 Dalton
Aliphatic index : 0.725
Instability index : 55.65
Hydrophobicity (GRAVY) : -0.55
Isoelectric point : 4.05
Charge (pH 7) : -1.2398
Aromaticity : 0.25
Molar extinction coefficient (cysteine, cystine): (1490, 1490)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : -2.005
Missing amino acid : W,T,I,M,E,K,F,N,G,C,R,H,Q,S,L,A
Most occurring amino acid : D
Most occurring amino acid frequency : 1
Least occurring amino acid : D
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0, 0.5, 0.5)
SMILES Notation: CC(C)[C@H](NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@@H](N)CC(=O)O)C(=O)N1CCC[C@H]1C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CCCC |
| Chou-Fasman (CF) | CCCC |
| Neural Network (NN) | CCCC |
| Joint/Consensus | CCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Huang F, et al. Two novel peptides derived from Sinonovacula constricta inhibit the proliferation and induce apoptosis of human prostate cancer cells. Mol Med Rep. 2017; 16:6697-6707. doi: 10.3892/mmr.2017.7418
Literature
Paper title : Two novel peptides derived from Sinonovacula constricta inhibit the proliferation and induce apoptosis of human prostate cancer cells.
Doi : https://doi.org/10.3892/mmr.2017.7418
Abstract : In China, the incidence of prostate cancer has been increasing. Toxicity, drug resistance and limited transient benefits in patients are the main problems associated with standard chemotherapeutic regimens, and new drugs are therefore required to treat prostate cancer. SCH‑P9 and SCH‑P10 proteins were obtained from Sinonovacula constricta hydrolysates. The amino acid sequences of SCH‑P9 and SCH‑P10 were identified as Leu‑Pro‑Gly‑Pro and Asp‑Tyr‑Val‑Pro, with molecular weights of 382.46 Da and 492.53 Da, respectively. An MTT assay, annexin V‑fluorescein isothiocyanate (FITC) staining and cell cycle analysis were applied to identify the viability of cells, stages of apoptosis, and cell cycle distribution, respectively. SCH‑P9 and SCH‑P10 inhibited the growth of DU‑145 and PC‑3 cells in a dose‑ and time‑dependent manner. Annexin V‑FITC staining and flow cytometry analysis were employed to measure apoptosis and cell cycle arrest, respectively. SCH‑P9 and SCH‑P10 inhibited the growth of DU‑145 cells by reducing the number of cells in G0/G1 phase, increasing the number in subG1 phase and inducing apoptosis. SCH‑P9 reduced the number of PC‑3 cells in subG1 and G0/G1 phases, increased the number of cells in G2/M phase and induced apoptosis. SCH‑P10 reduced the number of PC‑3 cells in G2/M phase, increased the number of cells in G0/G1 phase and induced apoptosis. In conclusion, the results demonstrated that SCH‑P9 and SCH‑P10 induced apoptosis in DU‑145 and PC‑3 cells and may, therefore, exhibit potential for application in the treatment of prostate cancer.