dbacp06034
General Description
Peptide name : Scolopendrasin VII
Source/Organism : Chinese red-headed centipede, Asia
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : FCTCNVKGFNAKNKRGIIYP
Peptide length: 20
C-terminal modification: Not found
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : MTS assay
Assay time : Not found
Activity : Not found
Cell line : Jurkat
Cancer type : Leukemia
Other activity : Anti-microbial activity
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2273.6781 Dalton
Aliphatic index : 0.585
Instability index : 45.935
Hydrophobicity (GRAVY) : -0.275
Isoelectric point : 9.6995
Charge (pH 7) : 3.7363
Aromaticity : 0.15
Molar extinction coefficient (cysteine, cystine): (1490, 1615)
Hydrophobic/hydrophilic ratio : 1.22222222
hydrophobic moment : -0.217
Missing amino acid : W,H,Q,M,E,S,D,L
Most occurring amino acid : N
Most occurring amino acid frequency : 3
Least occurring amino acid : T
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.3)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)CNC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](C)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)CNC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@H](CS)NC(=O)[C@@H](N)Cc1ccccc1)[C@@H](C)O)C(C)C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N1CCC[C@H]1C(=O)O)[C@@H](C)CC
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EEETTTTTCHHTTTTTEECC |
| Chou-Fasman (CF) | EEEECCCCHHHHCEEEECCC |
| Neural Network (NN) | CCCCCCCCCCCCCCCCCEEE |
| Joint/Consensus | EEECCCCCCCCCCCCCEECC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Lee JH, et al. Anticancer Activity of the Antimicrobial Peptide Scolopendrasin VII Derived from the Centipede, Scolopendra subspinipes mutilans. J Microbiol Biotechnol. 2015; 25:1275-80. doi: 10.4014/jmb.1503.03091
Literature
Paper title : Anticancer Activity of the Antimicrobial Peptide Scolopendrasin VII Derived from the Centipede, Scolopendra subspinipes mutilans.
Doi : https://doi.org/10.4014/jmb.1503.03091
Abstract : Previously, we performed de novo RNA sequencing of Scolopendra subspinipes mutilans using high-throughput sequencing technology and identified several antimicrobial peptide candidates. Among them, a cationic antimicrobial peptide, scolopendrasin VII, was selected based on its physicochemical properties, such as length, charge, and isoelectric point. Here, we assessed the anticancer activities of scolopendrasin VII against U937 and Jurkat leukemia cell lines. The results showed that scolopendrasin VII decreased the viability of the leukemia cells in MTS assays. Furthermore, flow cytometric analysis and acridine orange/ethidium bromide staining revealed that scolopendrasin VII induced necrosis in the leukemia cells. Scolopendrasin VII-induced necrosis was mediated by specific interaction with phosphatidylserine, which is enriched in the membrane of cancer cells. Taken together, these data indicated that scolopendrasin VII induced necrotic cell death in leukemia cells, probably through interaction with phosphatidylserine. The results provide a useful anticancer peptide candidate and an efficient strategy for new anticancer peptide development.