dbacp06081
General Description
Peptide name : Short α-helical peptide
Source/Organism : Alpha-helical proteins
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : GIIKKIIKKIIKKIIKKI
Peptide length: 18
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information: None
Activity Information
Assay type : MTT/MTS assay
Assay time : 24h
Activity : 80% Cytotoxicity at 4µM
Cell line : HeLa
Cancer type : Cervical cancer
Other activity : Anti-microbial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2118.8634 Dalton
Aliphatic index : 1.95
Instability index : -33.005
Hydrophobicity (GRAVY) : 0.4944
Isoelectric point : 10.845
Charge (pH 7) : 7.7521
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 1.25
hydrophobic moment : -1.382
Missing amino acid : W,T,P,M,E,F,D,N,C,R,H,Q,S,Y,L,A,V
Most occurring amino acid : I
Most occurring amino acid frequency : 9
Least occurring amino acid : G
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.4, 0.0, 0.5)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)CN)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHHHHHHHH |
| Chou-Fasman (CF) | EEEEEEEEEEEEEEECCC |
| Neural Network (NN) | CCHHHHHHHHHHHHHCCC |
| Joint/Consensus | CCHHHHHHHHHHHHHCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Reference
1 : Chen C, et al. Molecular mechanisms of anticancer action and cell selectivity of short α-helical peptides. Biomaterials. 2014; 35:1552-61. doi: 10.1016/j.biomaterials.2013.10.082
Literature
Paper title : Molecular mechanisms of anticancer action and cell selectivity of short α-helical peptides.
Doi : https://doi.org/10.1016/j.biomaterials.2013.10.082
Abstract : Development of functional biomaterials and drugs with good biocompatibility towards host cells but with high potency against cancer cells is a challenging endeavor. By drawing upon the advantageous features of natural antimicrobial peptides and α-helical proteins, we have designed a new class of short α-helical peptides G(IIKK)(n)I-NH2 (n = 1-4) with different potency and high selectivity against cancer cells. We show that the peptides with n = 3 and 4 kill cancer cells effectively whilst remaining benign to the host cells at their working concentrations, through mechanistic processes similar to their bactericidal effects. The high cell selectivity could stem from their preferential binding to the outer cell membranes containing negative charges and high fluidity. In addition to rapid membrane-permeabilizing capacities, the peptides can also induce the programmed cell death of cancer cells via both mitochondrial pathway and death receptor pathway, without inducing non-specific immunogenic responses. Importantly, these peptides can also inhibit tumor growth in a mouse xenograft model without eliciting side effects. Whilst this study reveals the clinical potential of these peptides as potent drugs and for other medical and healthcare applications, it also points to the significance of fundamental material research in the future development of highly selective peptide functional materials.