dbacp06412
General Description
Peptide name : Tyrosine-protein kinase Lck-486 peptide
Source/Organism : Tyrosine-protein kiNot foundse Lck-486 peptide
Linear/Cyclic : Not found
Chirality : Not found
Sequence Information
Sequence : TFDYLRSVL
Peptide length: 9
C-terminal modification: Not found
N-terminal modification : Not found
Non-natural peptide information: None
Activity Information
Assay type : ELISPOT assay
Assay time : 3days
Activity : Not found
Cell line : Colon26
Cancer type : Murine rectal cancer
Other activity : Not found
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1113.2628 Dalton
Aliphatic index : 1.188
Instability index : 106.533
Hydrophobicity (GRAVY) : 0.4222
Isoelectric point : 5.4983
Charge (pH 7) : -0.6017
Aromaticity : 0.222
Molar extinction coefficient (cysteine, cystine): (1490, 1490)
Hydrophobic/hydrophilic ratio : 0.8
hydrophobic moment : 1.4242
Missing amino acid : C,W,H,Q,P,M,I,E,K,N,A,G
Most occurring amino acid : L
Most occurring amino acid frequency : 2
Least occurring amino acid : T
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.2, 0.6)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](N)[C@@H](C)O)C(C)C)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CEHHETEEE |
| Chou-Fasman (CF) | EECEEECCC |
| Neural Network (NN) | CCCCHHHHH |
| Joint/Consensus | CCCCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID : Not available
Reference
1 : Matsueda S, et al. Antitumor activity of antibody against cytotoxic T lymphocyte epitope peptide of lymphocyte-specific protein tyrosine kinase. Cancer Sci. 2018; 109:611-617. doi: 10.1111/cas.13522
Literature
Paper title : Antitumor activity of antibody against cytotoxic T lymphocyte epitope peptide of lymphocyte-specific protein tyrosine kinase.
Doi : https://doi.org/10.1111/cas.13522
Abstract : Although humoral responses against CTL epitope peptides from lymphocyte-specific protein tyrosine kinase (Lck) antigen have been observed in the majority of healthy donors and cancer patients, the biological activity of the antibody has not been determined. We investigated the biological activity of mAb against CTL epitope peptide of Lck antigen at positions 486-494 (anti-Lck-486 mAb). This mAb induced dendritic cell maturation from murine bone marrow cells by the immune complex form in vitro, and inhibited tumor growth in association with a suppression of tumor-infiltrating T cells, including T regulatory cells in a murine model using female BALB/cCrlCrlj mice (H-2Kd ). More potent tumor inhibition was observed when this mAb was given prior to peptide vaccination. These results may help to unveil the biological activity of anti-Lck peptide antibodies against CTL epitope peptides.