dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp06611

General Description

Peptide name : Maculatin 1.3

Source/Organism : Fringed Tree Frog, Australia

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : GLLGLLGSVVSHVVPAIVGHF

Peptide length: 21

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information: None

Activity Information

Assay type : Not specified

Assay time : Not found

Activity : IC50 : 10−5 to 10−6 M

Cell line : Not specified

Cancer type : Ovarian cancer

Other activity : Not found

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2071.4636 Dalton

Aliphatic index : 1.666

Instability index : 14.8429

Hydrophobicity (GRAVY) : 1.6238

Isoelectric point : 6.9177

Charge (pH 7) : -0.0656

Aromaticity : 0.047

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 4.25

hydrophobic moment : -1.194

Missing amino acid : C,R,W,Q,T,M,E,K,D,Y,N

Most occurring amino acid : V

Most occurring amino acid frequency : 5

Least occurring amino acid : P

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (0.2, 0.3, 0.5)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)CN)C(C)C)C(C)C)C(C)C)C(C)C)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](Cc1ccccc1)C(=O)O)C(C)C

Secondary Structure :

Method Prediction
GOR TEEEEEEEEEEEEEEEEEEEE
Chou-Fasman (CF) CCCEEEEEEEEEEEEEEECCC
Neural Network (NN) CCEEECCCEEECCCEEEEECC
Joint/Consensus CCEEEEEEEEEEEEEEEEECC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 15203252

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID : Not available

Reference

Literature