dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp06785

General Description

Peptide name : NT-9

Source/Organism : Synthetic analogue of Neurotensin

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : RRPYIL

Peptide length: 6

C-terminal modification: Linear

N-terminal modification : Free

Non-natural peptide information:

Activity Information

Assay type : MTS assay

Assay time : 24-h

Activity : Not Available

Cell line : HCT-116

Cancer type : Colorectal Cancer

Other activity : Anticancer

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 816.9903 Dalton

Aliphatic index : 1.3

Instability index : 168

Hydrophobicity (GRAVY) : -0.6

Isoelectric point : 10.835

Charge (pH 7) : 1.7591

Aromaticity : 16.66

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 1

hydrophobic moment : -0.388

Missing amino acid : A,C,D,E,F,G,H,K,M,N,Q,S,T,V,W

Most occurring amino acid : R

Most occurring amino acid frequency : 2

Least occurring amino acid : P

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (16., 16., 50.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H](N)CCCNC(=N)N)C(=O)N[C@@H](CC(C)C)C(=O)O

Secondary Structure :

Method Prediction
GOR CCTEEE
Chou-Fasman (CF) CEECCC
Neural Network (NN) CCCEEE
Joint/Consensus CCCEEE

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 37298595.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7654

Reference

1 : Szaryńska M, et al. Bradykinin and Neurotensin Analogues as Potential Compounds in Colon Cancer Therapy. Int J Mol Sci. 2023; 24:(unknown pages). doi: 10.3390/ijms24119644

Literature

Paper title : Bradykinin and Neurotensin Analogues as Potential Compounds in Colon Cancer Therapy.

Doi : https://doi.org/10.3390/ijms24119644

Abstract : Colorectal cancer (CRC) is one of the most lethal malignancies worldwide, so the attempts to find novel therapeutic approaches are necessary. The aim of our study was to analyze how chemical modifications influence physical, chemical, and biological properties of the two peptides, namely, bradykinin (BK) and neurotensin (NT). For this purpose, we used fourteen modified peptides, and their anti-cancers features were analyzed on the HCT116 CRC cell line. Our results confirmed that the spherical mode of a CRC cell line culture better reflects the natural tumour microenvironment. We observed that the size of the colonospheres was markedly reduced following treatment with some BK and NT analogues. The proportion of CD133+ cancer stem cells (CSCs) in colonospheres decreased following incubation with the aforementioned peptides. In our research, we found two groups of these peptides. The first group influenced all the analyzed cellular features, while the second seemed to include the most promising peptides that lowered the count of CD133+ CSCs with parallel substantial reduction in CRC cells viability. These analogues need further analysis to uncover their overall anti-cancer potential.