dbacp06863
General Description
Peptide name : LK-LE3
Source/Organism : Synthetic
Linear/Cyclic : Cyclic
Chirality : L
Sequence Information
Sequence : CLKKLLKLLKKLLKLCLEELLHHLEELLHH
Peptide length: 30
C-terminal modification: Cyclic
N-terminal modification : Amidation
Non-natural peptide information:
Activity Information
Assay type : MTT assay
Assay time : 24-h
Activity : IC50 = 10.2 µM at pH 6
Cell line : HeLa
Cancer type : Cervical Cancer
Other activity : Anticancer
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 3642.5545 Dalton
Aliphatic index : 1.82
Instability index : 21.6
Hydrophobicity (GRAVY) : 0.2667
Isoelectric point : 8.761
Charge (pH 7) : 2.0942
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (2, 1)
Hydrophobic/hydrophilic ratio : 1.1429
hydrophobic moment : -0.137
Missing amino acid : A,D,F,G,I,M,N,P,Q,R,S,T,V,W,Y
Most occurring amino acid : L
Most occurring amino acid frequency : 14
Least occurring amino acid : C
Least occurring amino acid frequency : 2
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (80, 0, 46.)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CS)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)CS)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH |
| Chou-Fasman (CF) | HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH |
| Joint/Consensus | HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 7628
Reference
1 : Chang L, et al. One New Acid-Activated Hybrid Anticancer Peptide by Coupling with a Desirable pH-Sensitive Anionic Partner Peptide. ACS Omega. 2023; 8:7536-7545. doi: 10.1021/acsomega.2c06766
Literature
Paper title : One New Acid-Activated Hybrid Anticancer Peptide by Coupling with a Desirable pH-Sensitive Anionic Partner Peptide.
Doi : https://doi.org/10.1021/acsomega.2c06766
Abstract : Anticancer peptides (ACPs) are promising antitumor resources, and developing acid-activated ACPs as more effective and selective antitumor drugs would represent new progress in cancer therapy. In this study, we designed a new class of acid-activated hybrid peptides LK-LE by altering the charge shielding position of the anionic binding partner LE based on the cationic ACP LK and investigated their pH response, cytotoxic activity, and serum stability, in hoping to achieve a desirable acid-activatable ACP. As expected, the obtained hybrid peptides could be activated and exhibit a remarkable antitumor activity by rapid membrane disruption at acidic pH, whereas its killing activity could be alleviated at normal pH, showing a significant pH response compared with LK. Importantly, this study found that the peptide LK-LE3 with the charge shielding in the N-terminal of LK displayed notably low cytotoxicity and more stability, demonstrating that the position of charge masking is extremely important for the improvement of peptide toxicity and stability. In short, our work opens a new avenue to design promising acid-activated ACPs as potential targeting agents for cancer treatment.