dbacp07015
General Description
Peptide name : NAF-1
Source/Organism : NAF-1/CISD2
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : FLGVLALLGYLAVRPFLPKKKQQK
Peptide length: 24
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information:
Activity Information
Assay type : Not Available
Assay time :
Activity : IC50 = 18.3 ± 0.4 μM
Cell line : MDA-MB-231
Cancer type : Breast Cancer
Other activity : Anticancer
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2728.3658 Dalton
Aliphatic index : 1.3
Instability index : 47.9958
Hydrophobicity (GRAVY) : 0.3333
Isoelectric point : 10.582
Charge (pH 7) : 4.7551
Aromaticity : 12.5
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 2
hydrophobic moment : 0.3595
Missing amino acid : C,D,E,H,I,M,N,S,T,W
Most occurring amino acid : L
Most occurring amino acid frequency : 6
Least occurring amino acid : Y
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (50, 16., 45.)
SMILES Notation: CC(C)C[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)Cc1ccccc1)C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(=N)N)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(C)C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCCN)C(=O)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EEEEEHEETEEHHCHHCHHHHHHT |
| Chou-Fasman (CF) | EEECCCEEEECCCCCHHHHHHCCC |
| Neural Network (NN) | HHHHHHHHHHHHCCCCCCCCCCCC |
| Joint/Consensus | EEECCCEEEECCCCCCCHHHHCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 7253
Reference
1 : Sohn YS, et al. A peptide-derived strategy for specifically targeting the mitochondria and ER of cancer cells: a new approach in fighting cancer. Chem Sci. 2022; 13:6929-6941. doi: 10.1039/d2sc01934e
Literature
Paper title : A peptide-derived strategy for specifically targeting the mitochondria and ER of cancer cells: a new approach in fighting cancer.
Doi : https://doi.org/10.1039/d2sc01934e
Abstract : An effective anti-cancer therapy should exclusively target cancer cells and trigger in them a broad spectrum of cell death pathways that will prevent avoidance. Here, we present a new approach in cancer therapy that specifically targets the mitochondria and ER of cancer cells. We developed a peptide derived from the flexible and transmembrane domains of the human protein NAF-1/CISD2. This peptide (NAF-144-67) specifically permeates through the plasma membranes of human epithelial breast cancer cells, abolishes their mitochondria and ER, and triggers cell death with characteristics of apoptosis, ferroptosis and necroptosis. In vivo analysis revealed that the peptide significantly decreases tumor growth in mice carrying xenograft human tumors. Computational simulations of cancer vs. normal cell membranes reveal that the specificity of the peptide to cancer cells is due to its selective recognition of their membrane composition. NAF-144-67 represents a promising anti-cancer lead compound that acts via a unique mechanism.