dbacp07031
General Description
Peptide name : [G10a]2-SHa
Source/Organism : Analog of temporin SHa
Linear/Cyclic : Linear
Chirality : Mix
Sequence Information
Sequence : FLSGIVGMLaKLFKFLKaLMFLSGIVG
Peptide length: 27
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information:
Activity Information
Assay type : Resazurin dye assay
Assay time : 48-h
Activity : IC50 = 14.31 ± 1.37 µM
Cell line : HepG-2
Cancer type : Liver Cancer
Other activity : Antimicrobial and Anticancer
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2901.6578 Dalton
Aliphatic index : 1.370
Instability index : -21.092
Hydrophobicity (GRAVY) : 1.6259
Isoelectric point : 10.302
Charge (pH 7) : 2.7571
Aromaticity : 14.81
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 4
hydrophobic moment : 0.8081
Missing amino acid : A,C,D,E,H,N,P,Q,R,T,W,Y
Most occurring amino acid : L
Most occurring amino acid frequency : 6
Least occurring amino acid : S
Least occurring amino acid frequency : 2
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (48., 22., 51.)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)CNC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCSC)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCSC)NC(=O)CNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](N)Cc1ccccc1)[C@@H](C)CC)C(C)C)C(=O)N[C@H](C(=O)NCC(=O)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EETTHHHHHHHHHHHHHHHHHEEEEEC |
| Chou-Fasman (CF) | EEEEEEHHHHHHHHHHHHHHEEEECCC |
| Neural Network (NN) | CCCHHHHHHHHHHHHHHHHHHHHCCCC |
| Joint/Consensus | EECCHHHHHHHHHHHHHHHHHEEECCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 7071
Reference
1 : Khan AI, et al. Design, Synthesis and Characterization of [G10a]-Temporin SHa Dendrimers as Dual Inhibitors of Cancer and Pathogenic Microbes. Biomolecules. 2022; 12:(unknown pages). doi: 10.3390/biom12060770
Literature
Paper title : Design, Synthesis and Characterization of [G10a]-Temporin SHa Dendrimers as Dual Inhibitors of Cancer and Pathogenic Microbes.
Doi : https://doi.org/10.3390/biom12060770
Abstract : As the technologies for peptide synthesis and development continue to mature, antimicrobial peptides (AMPs) are being widely studied as significant contributors in medicinal chemistry research. Furthermore, the advancement in the synthesis of dendrimers' design makes dendrimers wonderful nanostructures with distinguishing properties. This study foregrounds a temporin SHa analog, [G10a]-SHa, and its dendrimers as globular macromolecules possessing anticancer and antibacterial activities. These architectures of temporin SHa, named as [G10a]-SHa, its dendrimeric analogs [G10a]<sub>2</sub>-SHa and [G10a]<sub>3</sub>-SHa, and [G10a]<sub>2</sub>-SHa conjugated with a polymer molecule, i.e., Jeff-[G10a]<sub>2</sub>-SHa, were synthesized, purified on RP-HPLC and UPLC and fully characterized by mass, NMR spectroscopic techniques, circular dichroism, ultraviolet, infrared, dynamic light scattering, and atomic force microscopic studies. In pH- and temperature-dependent studies, all of the peptide dendrimers were found to be stable in the temperature range up to 40-60 °C and pH values in the range of 6-12. Biological-activity studies showed these peptide dendrimers possessed improved antibacterial activity against different strains of both Gram-positive and Gram-negative strains. Together, these dendrimers also possessed potent selective antiproliferative activity against human cancer cells originating from different organs (breast, lung, prostate, pancreas, and liver). The high hemolytic activity of [G10a]<sub>2</sub>-SHa and [G10a]<sub>3</sub>-SHa dendrimers, however, limits their use for topical treatment, such as in the case of skin infection. On the contrary, the antibacterial and anticancer activities of Jeff-[G10a]<sub>2</sub>-SHa, associated with its low hemolytic action, make it potentially suitable for systemic treatment.