dbacp07101
General Description
Peptide name : K4F8K4
Source/Organism : Synthetic
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : KKKKFFFFFFFFKKKK
Peptide length: 16
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information:
Activity Information
Assay type : CCK-8 assay
Assay time : 48-h
Activity : IC50 = 571.87 ± 66.23 μg/mL
Cell line : A-549
Cancer type : Lung Cancer
Other activity : Antimicrobial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2220.7841 Dalton
Aliphatic index : 0
Instability index : -0.0187
Hydrophobicity (GRAVY) : -0.55
Isoelectric point : 10.845
Charge (pH 7) : 7.7521
Aromaticity : 50
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : 0.0329
Missing amino acid : A,C,D,E,G,H,I,L,M,N,P,Q,R,S,T,V,W,Y
Most occurring amino acid : K
Most occurring amino acid frequency : 8
Least occurring amino acid : K
Least occurring amino acid frequency : 8
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (50, 0, 50)
SMILES Notation: NCCCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](N)CCCCN)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHHHHTT |
| Chou-Fasman (CF) | HHHHEEEEEHHHHCCC |
| Neural Network (NN) | CCCCHHHHHHHHHCCC |
| Joint/Consensus | HHHHHHHHHHHHHCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 7060
Reference
1 : Yang D, et al. Therapeutic Effects of Synthetic Triblock Amphiphilic Short Antimicrobial Peptides on Human Lung Adenocarcinoma. Pharmaceutics. 2022; 14:(unknown pages). doi: 10.3390/pharmaceutics14050929
Literature
Paper title : Therapeutic Effects of Synthetic Triblock Amphiphilic Short Antimicrobial Peptides on Human Lung Adenocarcinoma.
Doi : https://doi.org/10.3390/pharmaceutics14050929
Abstract : Because of their unique properties, antimicrobial peptides (AMPs) represent a potential reservoir of novel anticancer therapeutic agents. However, only a few AMPs can kill tumors with high efficiency, and obtaining inexpensive anticancer AMPs with strong activity is still a challenge. In our previous work, a series of original short amphiphilic triblock AMP (K<sub>n</sub>F<sub>m</sub>K<sub>n</sub>) analogues were developed which were demonstrated to exert excellent effects on bacterial infection, both in vitro and in vivo. Herein, the overall objectives were to assess the potent tumoricidal capacities of these analogues against human lung cancer cell line A549 and the underlying mechanism. The results of the CCK-8 assay revealed that the precise modification of the peptides' primary sequences could modulate their tumoricidal potency. In the tumoricidal progress, positive charge and hydrophobicity were the key driving forces. Among these peptides, K<sub>4</sub>F<sub>6</sub>K<sub>4</sub> displayed the most remarkable tumoricidal activity. Furthermore, the excellent anticancer capacity of K<sub>4</sub>F<sub>6</sub>K<sub>4</sub> was proven by the live/dead cell staining, colony formation assay, and tumor growth observations on xenografted mice, which indicated that K<sub>4</sub>F<sub>6</sub>K<sub>4</sub> might be a promising drug candidate for lung cancer, with no significant adverse effects in vitro or in vivo. In addition, the cell apoptosis assay using flow cytometry, the morphology observations using the optical microscope, confocal microscopy using CellMask™ Deep Red staining, and scanning electron microscope suggested that membrane disruption was the primary mechanism of its antitumor action. Through analyzing the structure-activity relationship, it was found that the amount of positive charge required for K<sub>n</sub>F<sub>m</sub>K<sub>n</sub> to exert its optimal tumoricidal effect was more than that needed for the antimicrobial activity, while the optimal proportion of hydrophobicity was less. Our findings suggest that further analysis of the structure-activity relationship of AMPs' primary sequence variations will be beneficial. Hopefully, this work can provide guiding principles in designing peptide-based therapeutics for lung cancer.