dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp07297

General Description

Peptide name : vCPP0275

Source/Organism : Capsid protein of the Torque teno douroucouli virus

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : KKRYKKKYKAYKPYKKKKKF

Peptide length: 20

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information:

Activity Information

Assay type : MTT assay

Assay time : 24-h

Activity : IC50 = 34.0 ± 1.0 μM

Cell line : SK-BR-3

Cancer type : Breast Cancer

Other activity : Anticancer and Cell Penetrating

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2680.3283 Dalton

Aliphatic index : 0.05

Instability index : 18.26

Hydrophobicity (GRAVY) : -2.675

Isoelectric point : 10.473

Charge (pH 7) : 12.7441

Aromaticity : 25

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 0.1765

hydrophobic moment : -0.423

Missing amino acid : C,D,E,G,H,I,L,M,N,Q,S,T,V,W

Most occurring amino acid : K

Most occurring amino acid frequency : 12

Least occurring amino acid : R

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (65, 5, 25)

SMILES Notation: C[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCCN)NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1ccccc1)C(=O)O

Secondary Structure :

Method Prediction
GOR HHHHHTHHHHHCHHHHHHHH
Chou-Fasman (CF) HHHHHHHCCCCCCHHHHCCC
Neural Network (NN) HHHHHHHCCCCCCCCCCCCC
Joint/Consensus HHHHHHHCCCCCCHHHHCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 34679257.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7197

Reference

1 : Oliveira FD, et al. The antimetastatic breast cancer activity of the viral protein-derived peptide vCPP2319 as revealed by cellular biomechanics. FEBS J. 2022; 289:1603-1624. doi: 10.1111/febs.16247

Literature

Paper title : The antimetastatic breast cancer activity of the viral protein-derived peptide vCPP2319 as revealed by cellular biomechanics.

Doi : https://doi.org/10.1111/febs.16247

Abstract : The incidence of metastatic breast cancer (MBC) is increasing and the therapeutic arsenal available to fight it is insufficient. Brain metastases, in particular, represent a major challenge for chemotherapy as the impermeable nature of the blood-brain barrier (BBB) prevents most drugs from targeting cells in the brain. For their ability to transpose biological membranes and transport a broad spectrum of bioactive cargoes, cell-penetrating peptides (CPPs) have been hailed as ideal candidates to deliver drugs across biological barriers. A more ambitious approach is to have the CPP as a drug itself, capable of both killing cancer cells and interacting with the blood/brain interface, therefore blocking the onset of brain metastases. vCPP2319, a viral protein-derived CPP, has both properties as it: (a) is selective toward human breast cancer cells (MDA-MB-231) and increases cell stiffness compared to breast epithelial cells (MCF 10A) hindering the progression of metastases; and (b) adsorbs at the surface of human brain endothelial cells potentially counteracting metastatic cells from reaching the brain. Overall, the results reveal the selective anticancer activity of the peptide vCPP2319, which is also able to reside at the blood-brain interface, therefore counteracting brain penetration by metastatic cancer cells.