dbacp07336
General Description
Peptide name : Temporin-HLa
Source/Organism : Hylarana latouchii
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : FFPLIFGALSSILPKIL
Peptide length: 17
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information:
Activity Information
Assay type : MTT assay
Assay time : 24-h
Activity : IC50 = 4.96 ± 0.94 μM
Cell line : NCI-H23
Cancer type : Lung Cancer
Other activity : Antimicrobial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1876.3264 Dalton
Aliphatic index : 1.664
Instability index : 56.0706
Hydrophobicity (GRAVY) : 1.7529
Isoelectric point : 8.7501
Charge (pH 7) : 0.7591
Aromaticity : 17.64
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 4.6667
hydrophobic moment : 0.5575
Missing amino acid : C,D,E,H,M,N,Q,R,T,V,W,Y
Most occurring amino acid : L
Most occurring amino acid frequency : 4
Least occurring amino acid : G
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (35., 29., 58.)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)CNC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@@H]1CCCN1C(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](N)Cc1ccccc1)[C@@H](C)CC)[C@@H](C)CC)C(=O)N[C@@H](CC(C)C)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | CCEEEEHCCTTCCCEEE |
| Chou-Fasman (CF) | EEEEECCCEEEEEECCC |
| Neural Network (NN) | CCCEEHCCCCCCCCCCH |
| Joint/Consensus | CCEEECCCCCCCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6541
Reference
1 : Lin Y, et al. Evaluation of antimicrobial and anticancer activities of three peptides identified from the skin secretion of Hylarana latouchii. Acta Biochim Biophys Sin (Shanghai). 2021; 53:1469-1483. doi: 10.1093/abbs/gmab126
Literature
Paper title : Evaluation of antimicrobial and anticancer activities of three peptides identified from the skin secretion of Hylarana latouchii.
Doi : https://doi.org/10.1093/abbs/gmab126
Abstract : The skins of frogs of the family Ranidae are particularly rich sources of biologically active peptides, among which antimicrobial peptides (AMPs) constitute the major portion. Some of these have attracted the interest of researchers because they possess both antimicrobial and anticancer activities. In this study, with 'shotgun' cloning and MS/MS fragmentation, three AMPs, homologues of family brevinin-1 (brevinin-1HL), and temporin (temporin-HLa and temporin-HLb), were discovered from the skin secretion of the broad-folded frog, Hylarana latouchii. They exhibited various degrees of antimicrobial and antibiofilm activities against test microorganisms and hemolysis on horse erythrocytes. It was found that they could induce bacteria death through disrupting cell membranes and binding to bacterial DNA. In addition, they also showed different potencies towards human cancer cell lines. The secondary structure and physicochemical properties of each peptide were investigated to preliminarily reveal their structure-activity relationships. Circular dichroism spectrometry showed that they all adopted a canonical α-helical conformation in membrane-mimetic solvents. Notably, the prepropeptide of brevinin-1HL from H. latouchii was highly identical to that of brevinin-1GHd from Hylarana guentheri, indicating a close relationship between these two species. Accordingly, this study provides candidates for the design of novel anti-infective and antineoplastic agents to fight multidrug-resistant bacteria and malignant tumors and also offers additional clues for the taxonomy of ranid frogs.