dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp07409

General Description

Peptide name : Dermaseptin-TO

Source/Organism : Phyllomedusa tomopterna

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : ALWKDLLKNVGIAAGKAALNKVTDMVNQ

Peptide length: 28

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information:

Activity Information

Assay type : MTT assay

Assay time : 24-h

Activity : Graph Figure-7

Cell line : H-157

Cancer type : Lung Cancer

Other activity : Antimicrobial

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2982.4992 Dalton

Aliphatic index : 1.185

Instability index : 5.6714

Hydrophobicity (GRAVY) : 0.15

Isoelectric point : 9.5294

Charge (pH 7) : 1.7941

Aromaticity : 3.571

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 1.5455

hydrophobic moment : -0.003

Missing amino acid : C,E,F,H,P,R,S,Y

Most occurring amino acid : A

Most occurring amino acid frequency : 5

Least occurring amino acid : W

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (49., 25., 35.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)CNC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)N)C(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCSC)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)O)C(C)C)[C@@H](C)O)C(C)C

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHHHHHHHHHHHEEEEEHT
Chou-Fasman (CF) HHHHHHHCEEHHHHHHHHHEEEECCCCC
Neural Network (NN) HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Joint/Consensus HHHHHHHHHHHHHHHHHHHHHEECCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 33582221.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 6727

Reference

1 : Chen Z, et al. In vitro activities of a novel antimicrobial peptide isolated from phyllomedusa tomopterna. Microb Pathog. 2021; 153:104795. doi: 10.1016/j.micpath.2021.104795

Literature

Paper title : In vitro activities of a novel antimicrobial peptide isolated from phyllomedusa tomopterna.

Doi : https://doi.org/10.1016/j.micpath.2021.104795

Abstract : Because of the abuse of antibiotics, clinical strains began to become more drug-resistant. Their evolution has long surpassed the speed of us looking for a new generation of antibacterial drugs. Therefore, it is urgent to discover a new antimicrobial substance to alleviate the pressure on conventional antibiotics. Antimicrobial peptides (AMP) are known for their significant activity towards a broad spectrum of bacteria, protozoa, yeasts, filamentous fungi. Here, we report a novel AMP named Dermaseptin-TO. Results demonstrate that Dermaseptin-TO can quickly exhibit antimicrobial activity to bacteria and yeast in a dose-related way. The highest minimum inhibit concentration (MIC) was observed in the E.faecalis group (128 μM). Also, haemolytic outcomes showed no more than 10.65% of red blood cells were affected when in the same concentrations or below. Besides, Dermaseptin-TO also showed anticancer activity at a higher concentration. From the above, evidence proved that Phyllomedusine frog skin secretion is still a rich source that contains novel AMP and Dermaseptin-TO is competent to become an antimicrobial agent, its anticancer activity may broaden the way in basic cancer research. Also, following the same templates in molecular cloning may acquire new AMP classes with potent antimicrobial effects that could widen drug design in new anti-infective drugs.