dbacp07409
General Description
Peptide name : Dermaseptin-TO
Source/Organism : Phyllomedusa tomopterna
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : ALWKDLLKNVGIAAGKAALNKVTDMVNQ
Peptide length: 28
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information:
Activity Information
Assay type : MTT assay
Assay time : 24-h
Activity : Graph Figure-7
Cell line : H-157
Cancer type : Lung Cancer
Other activity : Antimicrobial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2982.4992 Dalton
Aliphatic index : 1.185
Instability index : 5.6714
Hydrophobicity (GRAVY) : 0.15
Isoelectric point : 9.5294
Charge (pH 7) : 1.7941
Aromaticity : 3.571
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 1.5455
hydrophobic moment : -0.003
Missing amino acid : C,E,F,H,P,R,S,Y
Most occurring amino acid : A
Most occurring amino acid frequency : 5
Least occurring amino acid : W
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (49., 25., 35.)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)CNC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)N)C(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCSC)C(=O)N[C@H](C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)O)C(C)C)[C@@H](C)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | HHHHHHHHHHHHHHHHHHHHHEEEEEHT |
| Chou-Fasman (CF) | HHHHHHHCEEHHHHHHHHHEEEECCCCC |
| Neural Network (NN) | HHHHHHHHHHHHHHHHHHHHHHHHHHHC |
| Joint/Consensus | HHHHHHHHHHHHHHHHHHHHHEECCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6727
Reference
1 : Chen Z, et al. In vitro activities of a novel antimicrobial peptide isolated from phyllomedusa tomopterna. Microb Pathog. 2021; 153:104795. doi: 10.1016/j.micpath.2021.104795
Literature
Paper title : In vitro activities of a novel antimicrobial peptide isolated from phyllomedusa tomopterna.
Doi : https://doi.org/10.1016/j.micpath.2021.104795
Abstract : Because of the abuse of antibiotics, clinical strains began to become more drug-resistant. Their evolution has long surpassed the speed of us looking for a new generation of antibacterial drugs. Therefore, it is urgent to discover a new antimicrobial substance to alleviate the pressure on conventional antibiotics. Antimicrobial peptides (AMP) are known for their significant activity towards a broad spectrum of bacteria, protozoa, yeasts, filamentous fungi. Here, we report a novel AMP named Dermaseptin-TO. Results demonstrate that Dermaseptin-TO can quickly exhibit antimicrobial activity to bacteria and yeast in a dose-related way. The highest minimum inhibit concentration (MIC) was observed in the E.faecalis group (128 μM). Also, haemolytic outcomes showed no more than 10.65% of red blood cells were affected when in the same concentrations or below. Besides, Dermaseptin-TO also showed anticancer activity at a higher concentration. From the above, evidence proved that Phyllomedusine frog skin secretion is still a rich source that contains novel AMP and Dermaseptin-TO is competent to become an antimicrobial agent, its anticancer activity may broaden the way in basic cancer research. Also, following the same templates in molecular cloning may acquire new AMP classes with potent antimicrobial effects that could widen drug design in new anti-infective drugs.