dbacp07468
General Description
Peptide name : Protonectin
Source/Organism : Parachartergus fraternus
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : ILGTILGLLKGL
Peptide length: 12
C-terminal modification: Linear
N-terminal modification : Amidation
Non-natural peptide information:
Activity Information
Assay type : Resazurin dye assay
Assay time : 24-h
Activity : CC50 = 14.8 ± 0.9 µM
Cell line : MM96L
Cancer type : Skin Cancer
Other activity : Antimicrobial
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 1210.5486 Dalton
Aliphatic index : 2.275
Instability index : 20.0417
Hydrophobicity (GRAVY) : 1.85
Isoelectric point : 8.7501
Charge (pH 7) : 0.7591
Aromaticity : 0
Molar extinction coefficient (cysteine, cystine): (0, 0)
Hydrophobic/hydrophilic ratio : 5
hydrophobic moment : 1.3529
Missing amino acid : A,C,D,E,F,H,M,N,P,Q,R,S,V,W,Y
Most occurring amino acid : L
Most occurring amino acid frequency : 5
Least occurring amino acid : T
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (50, 25, 66.)
SMILES Notation: CC[C@H](C)[C@H](N)C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)NCC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@@H](CC(C)C)C(=O)O)[C@@H](C)CC)[C@@H](C)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EEEEEEEEETTC |
| Chou-Fasman (CF) | EEEEEHHHHCCC |
| Neural Network (NN) | HCHHHHHHHCCC |
| Joint/Consensus | EEEEEHHHHCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6814
Reference
1 : Muller JAI, et al. Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus. Chembiochem. 2021; 22:1415-1423. doi: 10.1002/cbic.202000716
Literature
Paper title : Antimicrobial and Anticancer Properties of Synthetic Peptides Derived from the Wasp Parachartergus fraternus.
Doi : https://doi.org/10.1002/cbic.202000716
Abstract : Agelaia-MPI and protonectin are antimicrobial peptides isolated from the wasp Parachartergus fraternus that show antimicrobial and neuroactive activities. Previously, two analogues of these peptides, neuroVAL and protonectin-F, were designed to reduce nonspecific toxicity and improve potency. Here, the three-dimensional structures of neuroVAL, protonectin and protonectin-F were determined by using circular dichroism and NMR spectroscopy. Antibacterial, antifungal, cytotoxic and hemolytic activities were tested for the parent peptides and analogues. All peptides showed moderate antimicrobial activity against Gram-positive bacteria, with agelaia-MPI being the most active. Protonectin and protonectin-F were found to be toxic to cancerous and noncancerous cell lines. Internalization experiments revealed that these peptides accumulate inside both cell types. By contrast, neuroVAL was nontoxic to all tested cells and was able to enter cells without accumulating. In summary, neuroVAL has potential as a nontoxic cell-penetrating peptide, while protonectin-F needs further modification to realize its potential as an antitumor peptide.