dbacp07472
General Description
Peptide name : MzDef
Source/Organism : Zea mays L.
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : MSSSNCANVCQTENFPGGECKAEGATRKCFCKNC
Peptide length: 34
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information:
Activity Information
Assay type : MTT assay
Assay time : 24-h
Activity : IC50 ~ 22 µg/mL
Cell line : HepG-2
Cancer type : Liver Cancer
Other activity : Antimicrobial and Anticancer
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 3619.074 Dalton
Aliphatic index : 0.173
Instability index : 48.7941
Hydrophobicity (GRAVY) : -0.55
Isoelectric point : 7.5569
Charge (pH 7) : 0.4464
Aromaticity : 5.882
Molar extinction coefficient (cysteine, cystine): (6, 3)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : -0.000
Missing amino acid : D,H,I,L,W,Y
Most occurring amino acid : C
Most occurring amino acid frequency : 6
Least occurring amino acid : M
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (29., 32., 14.)
SMILES Notation: CSCC[C@H](N)C(=O)N[C@@H](CO)C(=O)N[C@@H](CO)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)NCC(=O)NCC(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CS)C(=O)O)[C@@H](C)O)[C@@H](C)O)C(C)C
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EECTTTCTTTCCCCCTTCHHHHTTHHHHHTTTTT |
| Chou-Fasman (CF) | CCCCCEEEECCCCCCCCHHHHHHCCCHHHHCCCC |
| Neural Network (NN) | CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC |
| Joint/Consensus | CCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6532
Reference
1 : Al Kashgry NAT, et al. Utilization of a recombinant defensin from Maize (Zea mays L.) as a potential antimicrobial peptide. AMB Express. 2020; 10:208. doi: 10.1186/s13568-020-01146-9
Literature
Paper title : Utilization of a recombinant defensin from Maize (Zea mays L.) as a potential antimicrobial peptide.
Doi : https://doi.org/10.1186/s13568-020-01146-9
Abstract : The search for effective and bioactive antimicrobial molecules to encounter the medical need for new antibiotics is an encouraging area of research. Plant defensins are small cationic, cysteine-rich peptides with a stabilized tertiary structure by disulfide-bridges and characterized by a wide range of biological functions. The heterologous expression of Egyptian maize defensin (MzDef) in Escherichia coli and subsequent purification by glutathione affinity chromatography yielded 2 mg/L of recombinant defensin peptide. The glutathione-S-transferase (GST)-tagged MzDef of approximately 30 kDa in size (26 KDa GST + ~ 4 KDa MzDef peptide) was immunodetected with anti-GST antibodies. The GST-tag was successfully cleaved from the MzDef peptide by thrombin, and the removal was validated by the Tris-Tricine gel electrophoresis. The MzDef induced strong growth inhibition of Rhizoctonia solani, Fusarium verticillioides, and Aspergillus niger by 94.23%, 93.34%, and 86.25%, respectively, whereas relatively weak growth inhibitory activity of 35.42% against Fusarium solani was recorded. Moreover, strong antibacterial activities were demonstrated against E. coli and Bacillus cereus and the moderate activities against Salmonella enterica and Staphylococcus aureus at all tested concentrations (0.1, 0.2, 0.4, 0.8, 1.6, and 3.2 µM). Furthermore, the in vitro MTT assay exhibited promising anticancer activity against all tested cell lines (hepatocellular carcinoma, mammary gland breast cancer, and colorectal carcinoma colon cancer) with IC<sub>50</sub> values ranging from 14.85 to 29.85 µg/mL. These results suggest that the recombinant peptide MzDef may serve as a potential alternative antimicrobial and anticancer agent to be used in medicinal application.