dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp07497

General Description

Peptide name : HX-12A

Source/Organism : Synthetic derivative of Temporin-Pta

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : FFRKVLKLIRKI

Peptide length: 12

C-terminal modification: Linear

N-terminal modification : Free

Non-natural peptide information:

Activity Information

Assay type : MTT assay

Assay time : 72-h

Activity : IC50 = 6.45 μM

Cell line : KB-C2

Cancer type : Cervical Cancer

Other activity : Antimicrobial

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 1561.0126 Dalton

Aliphatic index : 1.541

Instability index : -19.133

Hydrophobicity (GRAVY) : 0.475

Isoelectric point : 12

Charge (pH 7) : 4.7571

Aromaticity : 16.66

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 1.4

hydrophobic moment : 1.6044

Missing amino acid : A,C,D,E,G,H,M,N,P,Q,S,T,W,Y

Most occurring amino acid : K

Most occurring amino acid frequency : 3

Least occurring amino acid : V

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (41., 0, 58.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](N)Cc1ccccc1)C(C)C)[C@@H](C)CC)C(=O)O

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHH
Chou-Fasman (CF) CCHHHHHHCCCC
Neural Network (NN) HHHHHHHHHHHH
Joint/Consensus HHHHHHHHHHHH

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 32903706.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 6538

Reference

1 : Luo X, et al. Antimicrobial Peptide Reverses ABCB1-Mediated Chemotherapeutic Drug Resistance. Front Pharmacol. 2020; 11:1208. doi: 10.3389/fphar.2020.01208

Literature

Paper title : Antimicrobial Peptide Reverses ABCB1-Mediated Chemotherapeutic Drug Resistance.

Doi : https://doi.org/10.3389/fphar.2020.01208

Abstract : Multidrug resistance (MDR) of tumor cells to chemotherapeutic agents is the main reason for the failure of cancer chemotherapy. Overexpression of ABCB1 transporter that actively pumps various drugs out of the cells has been considered a major contributing factor for MDR. Over the past decade, many antimicrobial peptides with antitumor activity have been identified or synthesized, and some antitumor peptides have entered the clinical practice. In this study, we report that peptide HX-12C has the effect of reversing ABCB1-mediated chemotherapy resistance. In ABCB1-overexpressing cells, nontoxic dose of peptide HX-12C inhibited drug resistance and increased the effective intracellular concentration of paclitaxel and other ABCB1 substrate drugs. The mechanism study showed that peptide HX-12C stimulated ABCB1 ATPase activity without changing the expression level and localization patterns of ABCB1. Molecular docking predicted the binding modes between peptide HX-12C and ABCB1. Overall, we found that peptide HX-12C reverses ABCB1-mediated MDR through interacting with ABCB1 and blocking its function without affecting the transporter's expression and cellular localization. Our findings suggest that this antimicrobial peptide may be used as a novel prospective cancer therapeutic strategy in combination with conventional anticancer agents.