dbacp07847
General Description
Peptide name : [I11F-G18K]cT1
Source/Organism : Synthetic
Linear/Cyclic : Cyclic
Chirality : L
Sequence Information
Sequence : KWCFRVCYRGFCYRRCRK
Peptide length: 18
C-terminal modification: Cyclic
N-terminal modification : Cyclized
Non-natural peptide information:
Activity Information
Assay type : Resazurin dye assay
Assay time : 24-h
Activity : CC50 = 5.1 ± 0.3 µM
Cell line : HeLa
Cancer type : Cervical Cancer
Other activity : Host Defense Peptide
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2430.9462 Dalton
Aliphatic index : 0.161
Instability index : 17.7611
Hydrophobicity (GRAVY) : -0.8
Isoelectric point : 10.101
Charge (pH 7) : 6.7165
Aromaticity : 27.77
Molar extinction coefficient (cysteine, cystine): (4, 2)
Hydrophobic/hydrophilic ratio : 1
hydrophobic moment : -0.253
Missing amino acid : A,D,E,H,I,L,M,N,P,Q,S,T
Most occurring amino acid : R
Most occurring amino acid frequency : 5
Least occurring amino acid : W
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (11., 5.5, 33.)
SMILES Notation: CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CS)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | THHETTTTTTTTHHTTTT |
| Chou-Fasman (CF) | CEEEEEEEEEEEECCCCC |
| Neural Network (NN) | CCCEEEECCCCCCCCCCC |
| Joint/Consensus | CCCEEEECCCCCCCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6155
Reference
1 : Vernen F, et al. Cyclic Analogues of Horseshoe Crab Peptide Tachyplesin I with Anticancer and Cell Penetrating Properties. ACS Chem Biol. 2019; 14:2895-2908. doi: 10.1021/acschembio.9b00782
Literature
Paper title : Cyclic Analogues of Horseshoe Crab Peptide Tachyplesin I with Anticancer and Cell Penetrating Properties.
Doi : https://doi.org/10.1021/acschembio.9b00782
Abstract : Tachyplesin-I (TI) is a host defense peptide from the horseshoe crab Tachypleus tridentatus that has outstanding potential as an anticancer therapeutic lead. Backbone cyclized TI (cTI) has similar anticancer properties to TI but has higher stability and lower hemolytic activity. We designed and synthesized cTI analogues to further improve anticancer potential and investigated structure-activity relationships based on peptide-membrane interactions, cellular uptake, and anticancer activity. The membrane-binding affinity and cytotoxic activity of cTI were found to be highly dependent on peptide hydrophobicity and charge. We describe two analogues with increased selectivity toward melanoma cells and one analogue with the ability to enter cells with high efficacy and low toxicity. Overall, the structure-activity relationship study shows that cTI can be developed as a membrane-active antimelanoma lead, or be employed as a cell penetrating peptide scaffold that can target and enter cells without damaging their integrity.