dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp07847

General Description

Peptide name : [I11F-G18K]cT1

Source/Organism : Synthetic

Linear/Cyclic : Cyclic

Chirality : L

Sequence Information

Sequence : KWCFRVCYRGFCYRRCRK

Peptide length: 18

C-terminal modification: Cyclic

N-terminal modification : Cyclized

Non-natural peptide information:

Activity Information

Assay type : Resazurin dye assay

Assay time : 24-h

Activity : CC50 = 5.1 ± 0.3 µM

Cell line : HeLa

Cancer type : Cervical Cancer

Other activity : Host Defense Peptide

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 2430.9462 Dalton

Aliphatic index : 0.161

Instability index : 17.7611

Hydrophobicity (GRAVY) : -0.8

Isoelectric point : 10.101

Charge (pH 7) : 6.7165

Aromaticity : 27.77

Molar extinction coefficient (cysteine, cystine): (4, 2)

Hydrophobic/hydrophilic ratio : 1

hydrophobic moment : -0.253

Missing amino acid : A,D,E,H,I,L,M,N,P,Q,S,T

Most occurring amino acid : R

Most occurring amino acid frequency : 5

Least occurring amino acid : W

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (11., 5.5, 33.)

SMILES Notation: CC(C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CS)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H](N)CCCCN)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCNC(=N)N)C(=O)NCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CS)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)O

Secondary Structure :

Method Prediction
GOR THHETTTTTTTTHHTTTT
Chou-Fasman (CF) CEEEEEEEEEEEECCCCC
Neural Network (NN) CCCEEEECCCCCCCCCCC
Joint/Consensus CCCEEEECCCCCCCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 31714739.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 6155

Reference

1 : Vernen F, et al. Cyclic Analogues of Horseshoe Crab Peptide Tachyplesin I with Anticancer and Cell Penetrating Properties. ACS Chem Biol. 2019; 14:2895-2908. doi: 10.1021/acschembio.9b00782

Literature

Paper title : Cyclic Analogues of Horseshoe Crab Peptide Tachyplesin I with Anticancer and Cell Penetrating Properties.

Doi : https://doi.org/10.1021/acschembio.9b00782

Abstract : Tachyplesin-I (TI) is a host defense peptide from the horseshoe crab Tachypleus tridentatus that has outstanding potential as an anticancer therapeutic lead. Backbone cyclized TI (cTI) has similar anticancer properties to TI but has higher stability and lower hemolytic activity. We designed and synthesized cTI analogues to further improve anticancer potential and investigated structure-activity relationships based on peptide-membrane interactions, cellular uptake, and anticancer activity. The membrane-binding affinity and cytotoxic activity of cTI were found to be highly dependent on peptide hydrophobicity and charge. We describe two analogues with increased selectivity toward melanoma cells and one analogue with the ability to enter cells with high efficacy and low toxicity. Overall, the structure-activity relationship study shows that cTI can be developed as a membrane-active antimelanoma lead, or be employed as a cell penetrating peptide scaffold that can target and enter cells without damaging their integrity.