dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp07940

General Description

Peptide name : Pantinin-2

Source/Organism : Synthetic

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : IFGAIWKGISSLL

Peptide length: 13

C-terminal modification: Linear

N-terminal modification : Free

Non-natural peptide information:

Activity Information

Assay type : MTS assay

Assay time : 24-h

Activity : IC50 = 16.5 ± 1.0 µM

Cell line : DU-145

Cancer type : Prostate Cancer

Other activity : Antimicrobial

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 1404.6944 Dalton

Aliphatic index : 1.576

Instability index : 4.4538

Hydrophobicity (GRAVY) : 1.4231

Isoelectric point : 8.7501

Charge (pH 7) : 0.7591

Aromaticity : 15.38

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 3.3333

hydrophobic moment : 1.0857

Missing amino acid : C,D,E,H,M,N,P,Q,R,T,V,Y

Most occurring amino acid : I

Most occurring amino acid frequency : 3

Least occurring amino acid : F

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (30., 30., 53.)

SMILES Notation: CC[C@H](C)[C@H](N)C(=O)N[C@@H](Cc1ccccc1)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)O)[C@@H](C)CC)[C@@H](C)CC

Secondary Structure :

Method Prediction
GOR EEEEEHHTCTEEE
Chou-Fasman (CF) EEECEEEEEECCC
Neural Network (NN) CCCEEECCCCCEC
Joint/Consensus EEEEEECCCCCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id : 30409511.0

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 5926

Reference

1 : Crusca E, et al. Biophysical characterization and antitumor activity of synthetic Pantinin peptides from scorpion's venom. Biochim Biophys Acta Biomembr. 2018; 1860:2155-2165. doi: 10.1016/j.bbamem.2018.08.012

Literature

Paper title : Biophysical characterization and antitumor activity of synthetic Pantinin peptides from scorpion's venom.

Doi : https://doi.org/10.1016/j.bbamem.2018.08.012

Abstract : Antimicrobial peptides have been extensively described as bioactive agents, mainly considering their selective toxicity towards bacteria but not to healthy mammalian cells. In past years, this class of compounds has been classified as an attractive and novel family of anticancer agents. Pantinin peptides isolated from scorpion Pandinus imperator presented antimicrobial activity. In this study, we have explored the in vitro antitumor activity of antimicrobial pantinin peptides against the tumor cell lines MDA-MB-231 (breast adenocarcinoma) and DU - 145 (prostate adenocarcinoma) and healthy fibroblasts HGF - 1. To further improve our mechanistic understanding for this class of compounds, we have also performed a biophysical characterization of these peptides in lipid model membranes. Cell viability assays revealed that all peptides were more effective on tumor cells when compared to fibroblasts, indicating selectivity towards cancer cells. Furthermore, flow cytometry analysis revealed that all peptides induced apoptosis in cancer cells in a different way from fibroblasts. Circular dichroism spectroscopy showed that all peptides adopted an α-helical structure and an evaluation of the binding constant indicates a higher affinity of the peptides to negatively charged phospholipids. Additionally, permeabilization assays showed that POPG and POPS anionic vesicles were more susceptible to peptide-induced lysis than POPC:Chol and POPC:POPE vesicles. Moreover, we have observed that increasing concentrations of cholesterol inhibits peptide binding process. Therefore, our findings suggest that Pantinin peptides may have chemotherapeutic potential for cancer treatment.