dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp08322

General Description

Peptide name : Sample Peptide 3 from US011339203B2

Source/Organism : Synthetic

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : WFLREGSMFVALSASVFSLLAIKKRTLRKNDRKKR

Peptide length: 35

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information:

Activity Information

Assay type : CCK-8 assay

Assay time : 48-h

Activity : Cell Viability = 45.8% at 25 μM

Cell line : CAKI-2

Cancer type : Renal Cancer

Other activity : Anticancer

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 4153.9423 Dalton

Aliphatic index : 0.92

Instability index : 34.7686

Hydrophobicity (GRAVY) : -0.288

Isoelectric point : 11.849

Charge (pH 7) : 7.759

Aromaticity : 11.42

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 0.9444

hydrophobic moment : 0.0503

Missing amino acid : C,H,P,Q,Y

Most occurring amino acid : L

Most occurring amino acid frequency : 5

Least occurring amino acid : W

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (42., 19., 37.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CO)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCSC)NC(=O)[C@H](CO)NC(=O)CNC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](N)Cc1c[nH]c2ccccc12)C(C)C)C(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR HHHHTTHHHEHHHHHHHHHHHHHHHHHHHHHHTHH
Chou-Fasman (CF) CCCCCEECEECCEEEEEHHHHHHHCHHHHHHHCCC
Neural Network (NN) HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Joint/Consensus HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id :

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7818

Reference

Literature