dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp08324

General Description

Peptide name : Sample Peptide 5 from US011339203B2

Source/Organism : Synthetic

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : LYHKHYILECTTVFTLLLLSIVILYCRIKKRTLRKNDRKKR

Peptide length: 41

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information:

Activity Information

Assay type : CCK-8 assay

Assay time : 48-h

Activity : Cell Viability = 77.6% at 25 μM

Cell line : CAKI-2

Cancer type : Renal Cancer

Other activity : Anticancer

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 5091.1855 Dalton

Aliphatic index : 1.282

Instability index : 71.9415

Hydrophobicity (GRAVY) : -0.139

Isoelectric point : 10.300

Charge (pH 7) : 8.9095

Aromaticity : 9.756

Molar extinction coefficient (cysteine, cystine): (2, 1)

Hydrophobic/hydrophilic ratio : 0.7083

hydrophobic moment : -0.172

Missing amino acid : A,G,M,P,Q,W

Most occurring amino acid : L

Most occurring amino acid frequency : 8

Least occurring amino acid : E

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (36., 7.3, 53.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CS)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](CCCCN)NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@@H](N)CC(C)C)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O)C(C)C)[C@@H](C)O)[C@@H](C)CC)C(C)C)[C@@H](C)CC)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR HHTTTEEETTCEEEEEEEEEEEEEHHHHHHHHHHHHHHTHH
Chou-Fasman (CF) CCCEEECCEEEEEEECCEEEEEEEEEHHHHCHHHHHHHCCC
Neural Network (NN) HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Joint/Consensus CCCCCEEEEEEEEEECCEEEEEEEHHHHHHCHHHHHHHCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id :

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7820

Reference

Literature