dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp08340

General Description

Peptide name : Sample Peptide 4 from EP3604345B1

Source/Organism : Synthetic

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : PWWWPPVVVQQQMILLIGAARKKRTLRKNDRKKR

Peptide length: 34

C-terminal modification: Linear

N-terminal modification : Amidation

Non-natural peptide information:

Activity Information

Assay type : CCK-8 / WST-8

Assay time : 48-h

Activity : Cell Viability = 102.6% at 25 μM

Cell line : HCC-827

Cancer type : Lung Cancer

Other activity : Anticancer

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 4198.0462 Dalton

Aliphatic index : 0.888

Instability index : 57.3088

Hydrophobicity (GRAVY) : -0.870

Isoelectric point : 12

Charge (pH 7) : 8.9546

Aromaticity : 8.823

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 1.125

hydrophobic moment : 0.1398

Missing amino acid : C,E,F,H,S,Y

Most occurring amino acid : R

Most occurring amino acid frequency : 5

Least occurring amino acid : M

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (32., 17., 35.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](CCSC)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1C(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H]1CCCN1)C(C)C)C(C)C)C(C)C)[C@@H](C)CC)C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)O)[C@@H](C)O

Secondary Structure :

Method Prediction
GOR CCCCCCHHHHHHEEHHHHHHHHHHHHHHHHHTHH
Chou-Fasman (CF) EECEEEEEECCCEEEEHHHHHHHCHHHHHHHCCC
Neural Network (NN) CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Joint/Consensus CCCCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCC

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id :

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7833

Reference

Literature