dbacp08349
General Description
Peptide name : LPSBD-0
Source/Organism : Synthetic
Linear/Cyclic : Linear
Chirality : L
Sequence Information
Sequence : CQYSVNPKIKRFELYFKGRMW
Peptide length: 21
C-terminal modification: Linear
N-terminal modification : Free
Non-natural peptide information:
Activity Information
Assay type : Not Available
Assay time : 24-h
Activity : Not Available
Cell line : THP-1
Cancer type : Leukemia Cancer
Other activity : Anticancer
Physicochemical Properties
Amino acid composition bar chart :
Molecular mass : 2694.1822 Dalton
Aliphatic index : 0.509
Instability index : -2.7905
Hydrophobicity (GRAVY) : -0.714
Isoelectric point : 9.8635
Charge (pH 7) : 3.748
Aromaticity : 23.80
Molar extinction coefficient (cysteine, cystine): (1, 0)
Hydrophobic/hydrophilic ratio : 0.9091
hydrophobic moment : 0.5946
Missing amino acid : A,D,H,T
Most occurring amino acid : K
Most occurring amino acid frequency : 3
Least occurring amino acid : C
Least occurring amino acid frequency : 1
Structural Information
3D structure :
Secondary structure fraction (Helix, Turn, Sheet): (28., 19., 38.)
SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(N)=O)NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CS)C(C)C)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)O
Secondary Structure :
| Method | Prediction |
|---|---|
| GOR | EETTTCCTHHHHHHHHTTHHH |
| Chou-Fasman (CF) | EEECCCCCCHHHHEECCCCCC |
| Neural Network (NN) | CCCCCCCCCHHHHHHHHCCCC |
| Joint/Consensus | EECCCCCCCHHHHHHHCCCCC |
Molecular Descriptors and ADMET Properties
Molecular Descriptors: Click here to download
ADMET Properties: Click here to download
Cross Referencing databases
Pubmed Id :
Uniprot : Not available
PDB : Not available
CancerPPD : Not available
ApIAPDB : Not available
CancerPPD2 ID: 6207