dbACP: A Comprehensive Database of Anti-Cancer Peptides

dbacp08394

General Description

Peptide name : IDP-LLCb02

Source/Organism : Synthetic

Linear/Cyclic : Linear

Chirality : L

Sequence Information

Sequence : RQIKWFQNRRMKWKKSKAPKVVILSKALEYLQA

Peptide length: 33

C-terminal modification: Linear

N-terminal modification : Free

Non-natural peptide information:

Activity Information

Assay type : MTT/Alamamar-Blue/Hexosaminidase activity test

Assay time : 48-72 h

Activity : EC50 ~ 10 μM

Cell line : NCl-H82

Cancer type : Lung Cancer

Other activity : Anticancer

Physicochemical Properties

Amino acid composition bar chart :

Molecular mass : 4073.899 Dalton

Aliphatic index : 0.857

Instability index : 49.297

Hydrophobicity (GRAVY) : -0.778

Isoelectric point : 11.235

Charge (pH 7) : 8.7549

Aromaticity : 12.12

Molar extinction coefficient (cysteine, cystine): (0, 0)

Hydrophobic/hydrophilic ratio : 0.8333

hydrophobic moment : -0.585

Missing amino acid : C,D,G,H,T

Most occurring amino acid : K

Most occurring amino acid frequency : 7

Least occurring amino acid : F

Least occurring amino acid frequency : 1

Structural Information

3D structure :

Secondary structure fraction (Helix, Turn, Sheet): (45., 12., 33.)

SMILES Notation: CC[C@H](C)[C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCCN)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)CC)C(C)C)C(C)C

Secondary Structure :

Method Prediction
GOR HHHHHHHHHHHHHHHTTCHHHEEEHHHHHHHHH
Chou-Fasman (CF) CEECCCCHHHHHHHHCCCEEEEEHHHHHHHCCC
Neural Network (NN) CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Joint/Consensus CHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHH

Molecular Descriptors and ADMET Properties

Molecular Descriptors: Click here to download

ADMET Properties: Click here to download

Cross Referencing databases

Pubmed Id :

Uniprot : Not available

PDB : Not available

CancerPPD : Not available

ApIAPDB : Not available

CancerPPD2 ID: 7758

Reference

Literature